PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_063950_rfra.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 647aa    MW: 73669.5 Da    PI: 6.6794
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_063950_rfra.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-1218108190
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                         f+k+lt++dvl+s  l++p ++ + + + + e++ ++ + d  sg++W++ l+++k+ +++++ +GW ++vk ++L +g +vvF++  g  
  Bv3_063950_rfra.t1  18 FCKKLTKNDVLRS--LSVPESHSDVFfEAQDENG-EVAVFDlHSGEEWRFCLSFSKSNRQCTFLNGWLQYVKTKDLVAGHSVVFHRRvGLe 105
                         99*********98..9******977774444455.5666664899***************99999********************542433 PP

                         SEE CS
                  B3  88 sef 90 
                         s++
  Bv3_063950_rfra.t1 106 STE 108
                         444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1810119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1416101IPR015300DNA-binding pseudobarrel domain
CDDcd100179.12E-1317100No hitNo description
PfamPF023624.5E-1118113IPR003340B3 DNA binding domain
SMARTSM010192.4E-518118IPR003340B3 DNA binding domain
PROSITE profilePS508638.64231118IPR003340B3 DNA binding domain
SuperFamilySSF520583.51E-17312630IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.5E-5441601IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MEGSEGQQEG IQKTEQFFCK KLTKNDVLRS LSVPESHSDV FFEAQDENGE VAVFDLHSGE  60
EWRFCLSFSK SNRQCTFLNG WLQYVKTKDL VAGHSVVFHR RVGLESTEKL HHQLFIECIA  120
KSQRPSESGK PESSSSDRSG QRYTRNKRAF HAMLDCLHTL EDNMHLFVRE KCMNQSRLPV  180
SQNKSRVSRN YKSDSLIIIS QIYAECENCI LYLSLFPKDY EIDRDTLVQL WLVAGLIKEP  240
FAHDIAVAYL EALQSTGCIS CLMEDHRTGR VWYKINEFTI SSILSKRFNH LSVDKMGDAI  300
IDRFVRAPDH VTVQGLPQNL GVLKNLPWMT TLWFLRGYES HIECLPYNFF MSLRVLKVLS  360
LSRLRTLSEF PVSPKYGCSI TELKNLEDLQ GSLCLSRLQN VSSLAEVDQA NLRQKKGLSR  420
LELRWSPRQQ KDSKLDDEII AYLEPYSYLT HLRILYYGGS AFPSWIANPS FKNLVSMTLF  480
KCEQCQLLPS LGQLLSLESL NLNGLSGVKV IDLDFCGDNT PSGDGTPNVA FPKLQNFALT  540
SMLNLEEWRD MGEFYFSSLH KLAIKNCPKL ASLCSLSNVL SLQVLEISYC PLLPSLPMGP  600
LPASVGKLLI EDCPLLKSSC SELHGQDWYK MEHIPSIWID YEEISAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673190.10.0PREDICTED: putative disease resistance protein RGA3
STRINGXP_010673189.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-12B3 family protein