PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_062990_pkrq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Protein Properties

Length: 285aa MW: 33217 Da PI: 8.6599

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_062990_pkrq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.4e-17	17	112	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ffkv+ ++k+++l+lpk++++++ +++ + ++l+ r W+v+l k sg+++l+kGW++Fvk Lk g ++F++d++ s Bv3_062990_pkrq.t1 17 FFKVM-DVPSTKNHMLRLPKNYVKSYyKEQ-FAKDNVQLRVIGDcRNWRVEL--LKESGKVWLSKGWENFVKTYSLKYGYLLLFSYDEKdS 103 77777.88889999**********7333.33347888885555***..****************************97445 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ef +v++f++ Bv3_062990_pkrq.t1 104 EF--HVRIFDT 112 55..***97 PP
2	B3	37.7	3.5e-12	191	284	11	99
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++s+ l++p ++a+ h ++k +k ++l+ +++++ kl+ + k ++ + ++ W++Fv +n+Lk +D +vF+l++ ++ +++v Bv3_062990_pkrq.t1 191 STSRGLTIPLDYAKVHLKDK-HKKAIILKGPNNKKRCYKLKLyvylenCYKVKAQIYGTAWRKFVLDNELKIKDDCVFELIHPKSNTYKVI 280 56677******9995454.44689999977777765546776544444467789*******************999999** PP EE-S CS B3 96 vfrk 99 +fr+ Bv3_062990_pkrq.t1 281 IFRA 284 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.8E-20	11	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-18	13	113	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.57E-20	15	111	No hit	No description
PROSITE profile	PS50863	12.929	16	113	IPR003340	B3 DNA binding domain
SMART	SM01019	5.9E-13	17	113	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-14	17	112	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-13	175	284	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-11	175	284	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.502	181	285	IPR003340	B3 DNA binding domain
CDD	cd10017	5.45E-12	182	283	No hit	No description
SMART	SM01019	7.8E-6	188	285	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-11	191	284	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTSNSTFSSP TKKGPSFFKV MDVPSTKNHM LRLPKNYVKS YYKEQFAKDN VQLRVIGDCR 60 NWRVELLKES GKVWLSKGWE NFVKTYSLKY GYLLLFSYDE KDSEFHVRIF DTTCSEVDYD 120 FVFNHHTNKD KEVIELSSQD EYMSTDEVID DDISSEDDVA MDGNTSSIPC HAHGFQSPNP 180 HFKVCIGCWS STSRGLTIPL DYAKVHLKDK HKKAIILKGP NNKKRCYKLK LYVYLENCYK 240 VKAQIYGTAW RKFVLDNELK IKDDCVFELI HPKSNTYKVI IFRAP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673028.1	0.0	PREDICTED: B3 domain-containing protein Os03g0212300
TrEMBL	A0A0J8B1W5	1e-83	A0A0J8B1W5_BETVU; Uncharacterized protein
STRING	XP_010673028.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	7e-15	B3 family protein