PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_060840_gszt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 300aa    MW: 33370.1 Da    PI: 8.5889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_060840_gszt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13238283655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR+ri +++ +L+el+P+     +k  + a++L  Av+YIk+Lq
  Bv3_060840_gszt.t1 238 SIAERMRRNRISERMRKLQELVPNM----DKQTNTADMLDFAVDYIKNLQ 283
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16235296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.23E-12236285No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14237292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10238283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNEDCFDSYE RKPQRLNSQS GYVSNSAQMV VGVVEQSSSK LPPQYPKISS SSSSAIERTN  60
SMDFNLSSTR QGNCGLNLNR QNSSPAGFFN HLNNTQNGYT IMMGLGNFRV GNTANGESSP  120
RPSKLNLSHL PRIPELGNEN VKETSPDDGV KFRDHDTDAE FDSSPTGYSF VSWNDSGSDA  180
SHLSENGGLA NRPGLLSHHL SLPKTSAEMA AVEKLMHFQD VVPCKVRAKR GCATHPRSIA  240
ERMRRNRISE RMRKLQELVP NMDKQTNTAD MLDFAVDYIK NLQNQHKILS DNRARCKCLN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672727.20.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR34e-65BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0K9QVG31e-161A0A0K9QVG3_SPIOL; Uncharacterized protein
STRINGXP_010672727.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]