PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_060480_yxxg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 376aa    MW: 39890.9 Da    PI: 8.642
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_060480_yxxg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1375.6e-4374149176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC+ dls+ak+y++rhkvC +hsk++vv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Bv3_060480_yxxg.t1  74 RCQVEGCKIDLSDAKTYYSRHKVCGMHSKSSVVIVAGLEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 149
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3468136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.12972149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-4173153IPR004333Transcription factor, SBP-box
PfamPF031102.6E-3275148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDTGSNYPTV KGSSSTSSSS GLSDSLNGLK FGQKIYFEDV GGVGTSGKSS VAGSGGAPAK  60
RAGKGVVQSG QPPRCQVEGC KIDLSDAKTY YSRHKVCGMH SKSSVVIVAG LEQRFCQQCS  120
RFHRLPEFDQ GKRSCRRRLA GHNERRRKPP PGSLLSSRLG RLSSSLFGDN TGGSGGFLLD  180
FSSYPRHSER DLWPGSETSE QVSGSQSRSI MWPGNSEDPP SKMFLQGSAS GSSFSFPPGQ  240
CIGGVSSDSS CALSLLSNQT WSSRNQSSST GLGNSMNIDG APVSHSAAGH SVTVAHLPSS  300
SSPWGFKAND DPNCGLHTVP SGHLGLGQIS QPHFSSQYHH GDLMMDQVHD GGRQYMDVDH  360
SRAYNSATTH HVDWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31751481184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672689.10.0PREDICTED: squamosa promoter-binding-like protein 9
SwissprotA3C0572e-66SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0K9QU541e-172A0A0K9QU54_SPIOL; Uncharacterized protein
STRINGXP_010672689.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-37squamosa promoter binding protein-like 15