PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_059840_noxq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

SBP

Protein Properties

Length: 992aa MW: 110395 Da PI: 6.8397

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_059840_noxq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.7e-41	149	224	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak+yhrrhkvCevhska ++lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+ Bv3_059840_noxq.t1 149 VCQVEGCRADLSNAKDYHRRHKVCEVHSKAGEALVGNFMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKT 224 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.1E-33	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.718	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.1E-38	148	227	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-29	150	223	IPR004333	Transcription factor, SBP-box
Pfam	PF12796	2.6E-6	739	842	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.2E-10	759	879	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.3E-11	761	877	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.3	761	791	IPR002110	Ankyrin repeat
CDD	cd00204	8.73E-11	763	877	No hit	No description
SMART	SM00248	78	818	848	IPR002110	Ankyrin repeat
SMART	SM00248	2200	858	886	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MEAKNGGKSD FYGPLVNEMK GVGKRALEWD LNDWKWDGDR LIASSLNPAP LDCRSKQLFP 60 LGPEPGANSN VANGSFCSKD VDKTNEKGKR EMEKRRRVVV VPEENELSDA EPLNLKLGEQ 120 VYSIVECEVD KLEGKSVKKS KLAGTSQPVC QVEGCRADLS NAKDYHRRHK VCEVHSKAGE 180 ALVGNFMQRF CQQCSRFHAL QEFDEGKRSC RRRLAGHNKR RRKTLADSSP NVGSVADERS 240 ASHLLISLLR ILSNLHTNAS NESKEQDLIS HLLRNLASQV DGSNLPNLQQ GSQSLLNAGI 300 SVGIPEKNPS RAQESSHDVP SSEAKLGLLT REHQHETQQT PPASQPGLYQ AAGGSIPAKG 360 SVQEAYLGRH RLSNIDLNNV YNDSEECTDD LEKGQGTAAC SLRPELHLQK SSPPQTSGNS 420 DSTSGRCSSS GSETQGRTDR IVFKLFGKNP NELPHLLRTQ ILNWLSRSPT NIEGYIRPGC 480 IVLTIYLRLN KSLWEELCFD MSSSLSRLLS MSDDPFWKTG WIYTRVQQRA AFICDGQVLL 540 DTPLPFKSRQ SRILSISPIA VPAAETVKLV VKGSNLSGPF SRLLCAIEGK YLVQDSCYCL 600 VEGTNAASEH DRIQSLSFNC STPNVAGRGF IEVEDYGLSG SFFPFIVAEP EICSEICMLE 660 RVIEVVGTDE HIDREYGTID SRSDALDFIH EIGWLLHTNS LSSNPGQTDL HLELFPFSRV 720 KWLIEFSMDH DWCAVLRKLL DFLFSGTIDT GNHASIEHAL SDMTLLHTAV QRNNRQMVEF 780 LLRYIPKKVK NTLVLEQKQP DYGPPSSFLF RPDVTGSSGL TPLHIAASCA GFDNVLDALL 840 EDPEMVGIAA WENARDSTGL TPKDYACLRG HNHYISLFQM KINKNSSGKH VILDFLGFSD 900 IESKQKQSDK LRSAEFDSLY TEMLQVRQSC RLCEQKLDYG FRGATLTYRP AVLSLVAIAV 960 VCVCTALLFK SMPRVCYVFE PFRWDSLKYG AM

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MEAKNGGKSD FYGPLVNEMK GVGKRALEWD LNDWKWDGDR LIASSLNPAP LDCRSKQLFP  60
LGPEPGANSN VANGSFCSKD VDKTNEKGKR EMEKRRRVVV VPEENELSDA EPLNLKLGEQ  120
VYSIVECEVD KLEGKSVKKS KLAGTSQPVC QVEGCRADLS NAKDYHRRHK VCEVHSKAGE  180
ALVGNFMQRF CQQCSRFHAL QEFDEGKRSC RRRLAGHNKR RRKTLADSSP NVGSVADERS  240
ASHLLISLLR ILSNLHTNAS NESKEQDLIS HLLRNLASQV DGSNLPNLQQ GSQSLLNAGI  300
SVGIPEKNPS RAQESSHDVP SSEAKLGLLT REHQHETQQT PPASQPGLYQ AAGGSIPAKG  360
SVQEAYLGRH RLSNIDLNNV YNDSEECTDD LEKGQGTAAC SLRPELHLQK SSPPQTSGNS  420
DSTSGRCSSS GSETQGRTDR IVFKLFGKNP NELPHLLRTQ ILNWLSRSPT NIEGYIRPGC  480
IVLTIYLRLN KSLWEELCFD MSSSLSRLLS MSDDPFWKTG WIYTRVQQRA AFICDGQVLL  540
DTPLPFKSRQ SRILSISPIA VPAAETVKLV VKGSNLSGPF SRLLCAIEGK YLVQDSCYCL  600
VEGTNAASEH DRIQSLSFNC STPNVAGRGF IEVEDYGLSG SFFPFIVAEP EICSEICMLE  660
RVIEVVGTDE HIDREYGTID SRSDALDFIH EIGWLLHTNS LSSNPGQTDL HLELFPFSRV  720
KWLIEFSMDH DWCAVLRKLL DFLFSGTIDT GNHASIEHAL SDMTLLHTAV QRNNRQMVEF  780
LLRYIPKKVK NTLVLEQKQP DYGPPSSFLF RPDVTGSSGL TPLHIAASCA GFDNVLDALL  840
EDPEMVGIAA WENARDSTGL TPKDYACLRG HNHYISLFQM KINKNSSGKH VILDFLGFSD  900
IESKQKQSDK LRSAEFDSLY TEMLQVRQSC RLCEQKLDYG FRGATLTYRP AVLSLVAIAV  960
VCVCTALLFK SMPRVCYVFE PFRWDSLKYG AM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	149	223	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	97	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672614.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Refseq	XP_010672615.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A0J8CTR7	0.0	A0A0J8CTR7_BETVU; Uncharacterized protein
STRING	XP_010672614.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1