PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_057580_apog.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 256aa    MW: 29203.5 Da    PI: 9.5928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_057580_apog.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3437.9e-14271011490
                         T-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  14 grlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         +++ +p +f++     + +  + k  +l+d +++ +W+vk+  ++++    l++GW +F+k+++L+ g f+vFk+ g+  f
  Bv3_057580_apog.t1  27 SNFKIPVSFLKFLggdEDEIGGAKIAKLRDkTRSHVWNVKVGCDRRR----LEDGWVKFCKDHNLQMGNFLVFKHLGN--F 101
                         4589******77766533334778999***6677*******444444....***********************8774..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-1713109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1613109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.81414111IPR003340B3 DNA binding domain
CDDcd100174.29E-1415109No hitNo description
SMARTSM010191.4E-1117111IPR003340B3 DNA binding domain
PfamPF023622.1E-1027100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-10154247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-11155252IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-9158253No hitNo description
PROSITE profilePS508636.076159254IPR003340B3 DNA binding domain
SMARTSM010191.1E-8159255IPR003340B3 DNA binding domain
PfamPF023628.0E-8160253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPPPTSKRLR TTAHPRFFQP LCRDFLSNFK IPVSFLKFLG GDEDEIGGAK IAKLRDKTRS  60
HVWNVKVGCD RRRLEDGWVK FCKDHNLQMG NFLVFKHLGN FVFDVIILDG IGCESELPII  120
TEDEESQATR GNRKLGDGDG QGLQEKICAS LRSNNGRPYF SSIVTPSNLT SGITAIPKQF  180
AIKNGLTRRW CDIELRDDKG QSRRMKLRFS KESGCSYIYS RPTLYEPYDL VRGDIIIFEL  240
IDNGKNPAMK FYSKLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672239.21e-163PREDICTED: B3 domain-containing protein REM9-like
STRINGXP_010672371.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-25B3 family protein