PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_057240_hnxc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 755aa    MW: 85526.6 Da    PI: 6.2433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_057240_hnxc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32311202100
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ ++ye+++d+++++++sw+++g+sf+++++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k+
  Bv3_057240_hnxc.t1  31 FIIRTYELVDDSAVDDIVSWNDDGSSFILWQPAKFARDLLPKYFKHNNFSSFVRQLNIYGFRKVVPHR---------WEFANDCFKRGHKQ 112
                         9****************************************************************999.........************** PP

                         XXXXXXXX CS
        HSF_DNA-bind  93 llekikrk 100
                         ll+ i+ +
  Bv3_057240_hnxc.t1 113 LLCGIQPR 120
                         ***99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-3227118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-3527114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5327120IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-2931119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE profilePS514504.678279301IPR001611Leucine-rich repeat
SuperFamilySSF520582.69E-39326494IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.9E-22338498IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514505.286377398IPR001611Leucine-rich repeat
PROSITE profilePS514507.204400421IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.103.7E-12522697IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.69E-39524720IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MSPLPVKESD DAAAADGNAD EVQLLRNPSP FIIRTYELVD DSAVDDIVSW NDDGSSFILW  60
QPAKFARDLL PKYFKHNNFS SFVRQLNIYG FRKVVPHRWE FANDCFKRGH KQLLCGIQPR  120
ALRKLTSAVP STNNQLLKKA QRDFALRNKK KREMKKRLRK STEKFSGDSK DELGELEVEE  180
VTMGDNPIQS SISTDFLADY SIDPCLDSQP LSLVFSSPDF KPALSFDALY YCTLFPPRHE  240
FEKDTLIQLW MANGFVVCEP MERIAAMFFD DCITEGYFKL SRFDLVSGNA LYKLDRDNHL  300
ISSFISRGSD IIRIEGDSNL NNVSPAVSHV SIMCATLKDS TFHDLKRLEQ LRTLVFLQAH  360
TINFKQIPRD FFLMLKLLRV LDLSRTCLLE LPSSIGNMKC LCFLDLSENP IKRLPEAMSC  420
LENLQTLKLK GCLKLSALPK GMRKMTSLRH LDFDVLHQIR SMPQGMGALT NIRTLSAFLV  480
GVEEGCSIRQ LKNMNNLSGS FCISRLENVL TKDEAEEVCL SDKSQLQKLE LHWSDSQEEG  540
IVRYGEVLSS LQPNTSLEEL NISCYGGFEL PSWICDPAFS KLVSVTLFEC ENCLGLPSLG  600
QLPSLKFLNI TDFHKLKVID RNFYGVLGIP GYVAFPKLEN LTLENMSNLE EWLVNGSFDF  660
PHLIKLTIKH CPKLYSLRTL SCLSSLENLE ISHCTMLASC LDGNLPAGVE TFIVEDCPLI  720
SAKFLNEGSQ DWPKVAHIPH LWIDHQEMAF GQRSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212712816124Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136155LKKAQRDFALRNKKKREMKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672196.10.0PREDICTED: putative disease resistance RPP13-like protein 1
TrEMBLA0A0K9QX950.0A0A0K9QX95_SPIOL; Uncharacterized protein
STRINGXP_010672196.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.19e-45HSF family protein