PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_056570_rqwc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 13582.5 Da PI: 9.9648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.8 | 1e-12 | 7 | 52 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++ ++ + + lG+g Wk Ia++ R++ q+ s+ qky Bv3_056570_rqwc.t1 7 NPWTKEEHQSFLMGLQALGKGKWKGIAKKYVISRSPSQVASHAQKY 52 69*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.922 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.9E-16 | 6 | 55 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 7 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-11 | 7 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-8 | 8 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSDNAGNPWT KEEHQSFLMG LQALGKGKWK GIAKKYVISR SPSQVASHAQ KYFIRLAASE 60 KKKIRPSVFD ANLQEPQVDV DGNGQKKFVV GSCTPIMLYS YGPVTVNFSH ETYMYLPQGS 120 NP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672339.1 | 6e-88 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q9FKF9 | 4e-26 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | A0A1J6IGF3 | 2e-27 | A0A1J6IGF3_NICAT; Transcription factor myb1r1 | ||||
TrEMBL | A0A1S3YS01 | 4e-27 | A0A1S3YS01_TOBAC; transcription factor MYB1R1-like isoform X2 | ||||
TrEMBL | A0A1S3YS95 | 4e-27 | A0A1S3YS95_TOBAC; transcription factor MYB1R1-like isoform X1 | ||||
TrEMBL | A0A1S4AZ37 | 3e-27 | A0A1S4AZ37_TOBAC; transcription factor MYB1R1-like | ||||
TrEMBL | A0A1U7WU95 | 3e-27 | A0A1U7WU95_NICSY; transcription factor MYB1R1-like | ||||
STRING | XP_010672339.1 | 2e-87 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 1e-28 | MYB_related family protein |
Publications ? help Back to Top | |||
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