PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_053770_kkpk.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

CAMTA

Protein Properties

Length: 939aa MW: 106864 Da PI: 7.2781

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_053770_kkpk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.8	3e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +ke k+rwl+++ei+aiL n++ ++++ ++ + pk g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n Bv3_053770_kkpk.t1 29 MKEaKSRWLRPNEIHAILFNYTYFTIHVKPVSLPKGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDN 119 56669************************************************************************************ PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 p+f rrcywlL+++le+ivlvhy+e++ Bv3_053770_kkpk.t1 120 PKFVRRCYWLLDKTLEHIVLVHYRETQ 146 **********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.612	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.4E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.6E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.82E-9	384	470	IPR014756	Immunoglobulin E-set
Pfam	PF12796	6.4E-7	567	647	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-17	567	680	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.78E-17	567	677	No hit	No description
SuperFamily	SSF48403	1.24E-17	568	680	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.857	576	650	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.9E-6	618	647	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.487	618	650	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.41E-6	763	832	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.998	766	792	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	20	781	803	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.821	782	811	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0024	804	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.139	805	829	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0013	807	826	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.9	884	906	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.389	886	914	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.21	887	906	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MESNLNGGLG GYEIHGFRTM EDLDVTTMMK EAKSRWLRPN EIHAILFNYT YFTIHVKPVS 60 LPKGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP 120 KFVRRCYWLL DKTLEHIVLV HYRETQELQV SPTAPVSSGI RSDLSDYPAS QPPRDNDSLV 180 NQVYPPARRE SIESGDSINV SNHEIRLHEI NTLDWDELLV PNDLNEATLT IKDQTPYIQQ 240 EKQPAAFILE NNGSNSLTRH PHPDMLTSRN SMNPVAGTNC AQITHVGDMF LPLRGMLMDQ 300 KEQGRIFDMG TVDGGNLCLS DKMAKDGLES QDSFGKWMNE IIVDSPESVN EPSFGSCVAT 360 SHGSLMSSGA VSHEGPSPGQ IFCITDISPC WAFSNEETKI LVVGFFNQEY QHFAQSTVYC 420 VCGDACIPAE IIQVGVFRCL VSPQSPGSVS FYLSIDCSTP ISQILTFEFR APASNKFKGG 480 EDRSQWDVFR LQMRLAYLLF STSKSLEILS SKVSHSALKL GKKFAHKFSK LDDSWAYFTK 540 LIESEKISFQ QAKDSLFELA MKSRLKEWLL ERIVDGSKIS ERDAEGQGVL HLCAILGYTW 600 AVYPFSCCGI SLDFRDKFGW TALHWAAYHG REKMVAALLS AGAKPNLVTD PTSENPGGCT 660 AADLADKQGF EGLAAYLSEK ALVQQFEDMK IAGNAGGSLD THTYETTNSS DITEDELSLK 720 DTLAAYRTAA DAAARIQVAF REHAFVQKTK AVEVSNPEIE ARCIVAAMKI QHAFRNYELR 780 KQMAAAARIQ HRFRAWKLRR EFLNMRRQTI KIQAWYRGFQ VRRQYRKFIW SVGVLEKAIL 840 RWRQRRKGLR GLEVEIKEPD EDQRRESDTE EDFYRASRKQ AEERVENAVV RVQSMFRSKQ 900 AQKEYRRMKL AHTQAQLEYE DSINPYDESS YMCFDESRR

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MESNLNGGLG GYEIHGFRTM EDLDVTTMMK EAKSRWLRPN EIHAILFNYT YFTIHVKPVS  60
LPKGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP  120
KFVRRCYWLL DKTLEHIVLV HYRETQELQV SPTAPVSSGI RSDLSDYPAS QPPRDNDSLV  180
NQVYPPARRE SIESGDSINV SNHEIRLHEI NTLDWDELLV PNDLNEATLT IKDQTPYIQQ  240
EKQPAAFILE NNGSNSLTRH PHPDMLTSRN SMNPVAGTNC AQITHVGDMF LPLRGMLMDQ  300
KEQGRIFDMG TVDGGNLCLS DKMAKDGLES QDSFGKWMNE IIVDSPESVN EPSFGSCVAT  360
SHGSLMSSGA VSHEGPSPGQ IFCITDISPC WAFSNEETKI LVVGFFNQEY QHFAQSTVYC  420
VCGDACIPAE IIQVGVFRCL VSPQSPGSVS FYLSIDCSTP ISQILTFEFR APASNKFKGG  480
EDRSQWDVFR LQMRLAYLLF STSKSLEILS SKVSHSALKL GKKFAHKFSK LDDSWAYFTK  540
LIESEKISFQ QAKDSLFELA MKSRLKEWLL ERIVDGSKIS ERDAEGQGVL HLCAILGYTW  600
AVYPFSCCGI SLDFRDKFGW TALHWAAYHG REKMVAALLS AGAKPNLVTD PTSENPGGCT  660
AADLADKQGF EGLAAYLSEK ALVQQFEDMK IAGNAGGSLD THTYETTNSS DITEDELSLK  720
DTLAAYRTAA DAAARIQVAF REHAFVQKTK AVEVSNPEIE ARCIVAAMKI QHAFRNYELR  780
KQMAAAARIQ HRFRAWKLRR EFLNMRRQTI KIQAWYRGFQ VRRQYRKFIW SVGVLEKAIL  840
RWRQRRKGLR GLEVEIKEPD EDQRRESDTE EDFYRASRKQ AEERVENAVV RVQSMFRSKQ  900
AQKEYRRMKL AHTQAQLEYE DSINPYDESS YMCFDESRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWKKKK
2	72	87	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671665.1	0.0	PREDICTED: calmodulin-binding transcription activator 6 isoform X1
Refseq	XP_010671666.1	0.0	PREDICTED: calmodulin-binding transcription activator 6 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0K9QKS6	0.0	A0A0K9QKS6_SPIOL; Uncharacterized protein
STRING	XP_010671665.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]