PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_053610_mmkx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 773aa    MW: 85235.7 Da    PI: 5.5748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_053610_mmkx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.64e-1063957732374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++l++e+A+a+++g++e a++lLarl  +++++g++ qRla y+ +AL++r +  ++e+++  p+ e     s+e+++a+  ++++sP++k
  Bv3_053610_mmkx.t1 395 KQLVFEAATAIADGKNEPATELLARLARISNSKGNSEQRLAYYMGNALRSRASP-SNEIVAPAPVLELY---SDEQMQAMYSLHDISPCFK 481
                         6899************************************************99.66677666666666...999999************* PP

                GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.......egppslRiTgvgspesgskeeleetgerLakfAeel 172
                         f+ l+aN  +lea+ ++    +rvH+iDfd+++G+Q+++Ll+aLa+R+        g+ +l++T+v+  e +++  + ++++ L k+Ae++
  Bv3_053610_mmkx.t1 482 FGLLAANLVMLEAITSAlqegSRVHVIDFDVGHGAQYINLLRALAERRsqmgtagVGSYELKVTVVET-EVTNRGVMDSVKDGLMKLAERV 571
                         *******88888877766667************************99966665555589********9.66799***************** PP

                GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                         gv+++f+  +++++++l+ e+L +++gEa++Vn++++lhr++desvs+e+ rde+L+ vk+l+P+ v++veqe++ n+++Fl+r+ e++ y
  Bv3_053610_mmkx.t1 572 GVNLKFES-LTRKITELTHESLGCEEGEAIVVNFAFKLHRVPDESVSMENLRDELLRRVKGLNPRAVTLVEQEMNGNTAPFLTRVNESCGY 661
                         ********.5999****************************************************************************** PP

                GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
                         y al+dslea+lpr++++r+ vE+  lgr+  n +aceg++r+er e ++kWr+r+++aGF+  pls+++a+++++ l+     + g++v+
  Bv3_053610_mmkx.t1 662 YGALLDSLEATLPRDNSDRVRVEEG-LGRKMGNSIACEGRDRVERAEVFGKWRARMGMAGFELKPLSQTVAESMRTKLNSARggNPGFTVK 751
                         *************************.****************************************************998877899**** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         eesg + +gW++r+L+++SaWr
  Bv3_053610_mmkx.t1 752 EESGGVGFGWMGRTLTVASAWR 773
                         *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.885368751IPR005202Transcription factor GRAS
PfamPF035141.4E-103395773IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MTSGFSGDYF YGGGASTGTG RTTSLTGIGS FRQQQQQQQQ PPQTLSLQQQ AMFPSMDQIA  60
QRRTDLLLGK RSFGDFQAYQ QQLLLQQHQQ QQQQQQQQNT FLFLQKQQQQ QQQQSHQQQL  120
SFLQQQYLMR SVKQRTNAFT SSPISPLSPT IDLCSPTTNT NSLSSSSSAR LGVPIPIYQQ  180
LRQQQQQQQT ISVVNKNNNN IQHNQFNPTN NCLISNLSST NNNLINNPIQ NPNPGYSYLR  240
YSNVVQTKPE TEPDNFSGVG YSNNLVSEPM EPKLEPDSED HKILDTLHEL EKQLLNDDDD  300
NEEDNDAVSV ITNSEWSETF QNLMSPGGNS NTNHASSSTS GSTNTNTNTI TSNNNNNNNS  360
MISPSPTSST SSCCSTSAPA PAPQVPPPPE TLSAKQLVFE AATAIADGKN EPATELLARL  420
ARISNSKGNS EQRLAYYMGN ALRSRASPSN EIVAPAPVLE LYSDEQMQAM YSLHDISPCF  480
KFGLLAANLV MLEAITSALQ EGSRVHVIDF DVGHGAQYIN LLRALAERRS QMGTAGVGSY  540
ELKVTVVETE VTNRGVMDSV KDGLMKLAER VGVNLKFESL TRKITELTHE SLGCEEGEAI  600
VVNFAFKLHR VPDESVSMEN LRDELLRRVK GLNPRAVTLV EQEMNGNTAP FLTRVNESCG  660
YYGALLDSLE ATLPRDNSDR VRVEEGLGRK MGNSIACEGR DRVERAEVFG KWRARMGMAG  720
FELKPLSQTV AESMRTKLNS ARGGNPGFTV KEESGGVGFG WMGRTLTVAS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3741777326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671651.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A0K9RTG00.0A0A0K9RTG0_SPIOL; Uncharacterized protein
STRINGXP_010671651.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-128SCARECROW-like 8