PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_052640_ymhm.t3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | bZIP | ||||||||
Protein Properties | Length: 357aa MW: 38172.4 Da PI: 6.7118 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 66.9 | 3.4e-21 | 247 | 309 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rkq+NRe+ArrsR+RK+ae+eeL + v++L eN+aL++e+++l+ ++kl+se+ Bv3_052640_ymhm.t3 247 ERELKREKRKQSNRESARRSRLRKQAEMEELGKQVESLNVENMALQSEINKLEADSEKLRSEN 309 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.8E-28 | 1 | 87 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 1.4E-16 | 244 | 307 | No hit | No description |
Pfam | PF00170 | 1.8E-19 | 247 | 309 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 4.0E-20 | 247 | 311 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.829 | 249 | 312 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-11 | 250 | 306 | No hit | No description |
CDD | cd14702 | 9.52E-21 | 252 | 299 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 254 | 269 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGNSEGEKPT KSNKTVSPPR EQSSVHVYPD WATVQTYYGP GALSPPYLNQ AVASGHAAHP 60 YMWAPPQMMA PYGSPYAAMY SHGGLYGPSV PMATTPLSLE TPGKSSGKDS GSGKMKRKSG 120 VRAASGNGNA NAESAGDGGV RGQSQSTDCG TECSCDISDD STAREDYNSR SCNGVLDTGT 180 CNTQMNDVVP GIPIASVKPL TPEMNHCPSA RLDVNAVNAA APCASRPSGV GLQSAAVIFE 240 IVPVEDEREL KREKRKQSNR ESARRSRLRK QAEMEELGKQ VESLNVENMA LQSEINKLEA 300 DSEKLRSENA AIMDKLKNMQ GQGNEMGSDR TEHQKMSHIN TENLLSRLSN AVSNGVH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 269 | RRSRLRK |
2 | 263 | 270 | RRSRLRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671544.1 | 0.0 | PREDICTED: common plant regulatory factor 1 isoform X2 | ||||
TrEMBL | A0A0K9S0Q4 | 1e-173 | A0A0K9S0Q4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010671541.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.2 | 7e-32 | G-box binding factor 3 |