PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_052640_ymhm.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bZIP
Protein Properties Length: 348aa    MW: 37279.4 Da    PI: 7.1778
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_052640_ymhm.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1673.3e-21238300163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkre+rkq+NRe+ArrsR+RK+ae+eeL + v++L  eN+aL++e+++l+  ++kl+se+
  Bv3_052640_ymhm.t2 238 ERELKREKRKQSNRESARRSRLRKQAEMEELGKQVESLNVENMALQSEINKLEADSEKLRSEN 300
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.7E-28187IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.8E-17234298No hitNo description
PfamPF001701.7E-19238300IPR004827Basic-leucine zipper domain
SMARTSM003384.0E-20238302IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.829240303IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11241297No hitNo description
CDDcd147021.62E-20243290No hitNo description
PROSITE patternPS000360245260IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGNSEGEKPT KSNKTVSPPR EQSSVHVYPD WATVQTYYGP GALSPPYLNQ AVASGHAAHP  60
YMWAPPQMMA PYGSPYAAMY SHGGLYGPSV PMCMQATTPL SLETPGKSSG KDSGSGKMKR  120
KSGVRAASGN GNANAESAGD GGVRGQSQST DCGTECSCDI SDDSTAREDY NSRSCNGVLD  180
TGTCNTQMND VVPGIPIASV KPLTPEMNHC PSARLDVNAV NAAAPCASRP SGVGLQDERE  240
LKREKRKQSN RESARRSRLR KQAEMEELGK QVESLNVENM ALQSEINKLE ADSEKLRSEN  300
AAIMDKLKNM QGQGNEMGSD RTEHQKMSHI NTENLLSRLS NAVSNGVH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260RRSRLRK
2254261RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671541.10.0PREDICTED: common plant regulatory factor 1 isoform X1
RefseqXP_010671542.10.0PREDICTED: common plant regulatory factor 1 isoform X1
RefseqXP_010671543.10.0PREDICTED: common plant regulatory factor 1 isoform X1
RefseqXP_019104065.10.0PREDICTED: common plant regulatory factor 1 isoform X1
TrEMBLA0A0K9S2E71e-177A0A0K9S2E7_SPIOL; Uncharacterized protein
STRINGXP_010671541.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.21e-47G-box binding factor 3