PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_049720_frmg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 502aa    MW: 56084.6 Da    PI: 4.8797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_049720_frmg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.18e-35301212102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d ++++++sws+n++sfvv++  ef+k++Lpk+Fkh+nfaSFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Bv3_049720_frmg.t1  30 FLSKTYDMVDDISTDSVVSWSSNNKSFVVWNVPEFSKELLPKFFKHKNFASFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQKH 111
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+ i+r+k 
  Bv3_049720_frmg.t1 112 LLKGINRRKP 121
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3721113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-3326119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5926119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3030119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MIGESSSTTT MASESSNSSN NNGVNSPAPF LSKTYDMVDD ISTDSVVSWS SNNKSFVVWN  60
VPEFSKELLP KFFKHKNFAS FVRQLNTYGF RKVDPDRWEF ANEGFVRGQK HLLKGINRRK  120
PVNAHPHSQQ SSTQSTSGKA CVEVGKFGIE EEVERLKRDK NVLMQELVRL RQQQQTTDNQ  180
LQSVGERVQG MEQRQQQMMS FLAKAMQRPG FLAQLVQQKN DGNRHVTGGS KKRRLPNHDE  240
ENASMESTHS AFSDGQIVKY QPLINEAAKS MLREIMKLSG PLLDQSHKDP NTFLLDHVPS  300
TSDVDCGSSS TRTSGVILSE VAQCSKQTIF PEETGFSSTN VVNLEMHSSC PVSDTSEEVH  360
IQGANLNMSQ EDAMMPDFNQ VLIPESGLKF PDLTFSEIQN PDVGFMDSMS TVQNGTLPID  420
AEAFSPATDL DVLLPGSNDV FWEQFFPMSP LPDIREEVDS STPEASIARE LGIEKDNGWE  480
KLHYMNHLTD QMGLLTAETE RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222511925129Heat shock factor protein 1
5d5v_B1e-222511925129Heat shock factor protein 1
5d5v_D1e-222511925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671101.10.0PREDICTED: heat stress transcription factor A-1e
RefseqXP_010671102.10.0PREDICTED: heat stress transcription factor A-1e
RefseqXP_010671103.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotQ84T611e-146HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0K9RLV20.0A0A0K9RLV2_SPIOL; Uncharacterized protein
STRINGXP_010671101.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-125heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]