PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_049670_hwcc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 39675.5 Da PI: 6.5076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W++ ++ g++R++k+c++rw +yl Bv3_049670_hwcc.t1 15 KGPWTPEEDKQLTDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.5e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++ lG++ W++Ia++++ gRt++++k+ w+++l Bv3_049670_hwcc.t1 68 RGKFTDEEQQTIINLHSVLGNK-WSAIASHLP-GRTDNEIKNLWNTHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.927 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.784 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-27 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.67E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MMGRSPCCDE SGLKKGPWTP EEDKQLTDYI QRHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FTDEEQQTII NLHSVLGNKW SAIASHLPGR TDNEIKNLWN THLKKKLLQM 120 GIDPVTHRPR TDLNLLANLP QLLMAANISS SLMMNSGNIG NHTLEDTLRL IESDAAQLAK 180 FQILHNLLQV LSPSSSNNAP PAGLLSNSTM PFQNQVNDNY NLLRMANSRV ETGVTAGITA 240 SEISQFPALN TFGGSSSFET PATHQQLQTN QHDTKQTDAE IRTPESLMPA LVPASPDHCS 300 TSQIDTIIMS SNPSSATTAA TDPFETAAAS WTNDLIDDAE HSYWRDIIEQ ASSPSWPISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671094.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Refseq | XP_019103974.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9S9Z2 | 8e-91 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0K9RLU6 | 1e-175 | A0A0K9RLU6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010671094.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-97 | myb domain protein 9 |
Publications ? help Back to Top | |||
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