PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_048700_sktd.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 273aa MW: 31009.1 Da PI: 4.753

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_048700_sktd.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.6e-06	159	183	6	30
HHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 6 nerErrRRdriNsafeeLrellPka 30 E+rRR+ri ++++ L l+P++ Bv3_048700_sktd.t2 159 RDSEQRRRKRISDKLQVLDNLVPHS 183 678********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.0013	154	185	No hit	No description
SuperFamily	SSF47459	7.56E-5	157	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-5	159	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSCFKCGTSS GNVNASSFSG FNITSNMQAA LTDQVDVAIN DTTSAEDFDA LHDWMDNQLA 60 DLAKHDHNDV DGYLSLQDNN KDTVSQDVTG LDFQISSLHD SDDDHHDDHT MDHNFIREVE 120 LRNVDFDTSK GRQLFEPEQT SPLDEDQQGA TCWKVSKKRD SEQRRRKRIS DKLQVLDNLV 180 PHSHKMMLGW QRQSQLQQAS YATQTFVPMM MTDMQFGAVN SSGITRAQPI YQMPISPTLY 240 QQQPPNFYHP STTASFEQPT FCPPTTRQLP PHF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670991.1	0.0	PREDICTED: transcription factor HFR1 isoform X2
STRING	XP_010670990.1	0.0	(Beta vulgaris)