PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_048690_zurc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 284aa    MW: 32495.1 Da    PI: 6.7265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_048690_zurc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-1197143455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+ + + f  L +++P +     kK++K ++L +A+ YIk+Lq
  Bv3_048690_zurc.t1  97 DHIIAERKRRELLSQMFISLSTMVPGL-----KKVDKTSVLGEAITYIKKLQ 143
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.15193142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1496153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-997143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1397151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-1098147No hitNo description
SMARTSM003531.4E-1199148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDTDPPVQTL INNSYHQYHH SETIEASFDE DIAVMLGEDF PYPLPIENNN KNDDNDYNII  60
MGSNVQEKQR CKNKEMTEKQ AECGGTKRKR RPDQVQDHII AERKRRELLS QMFISLSTMV  120
PGLKKVDKTS VLGEAITYIK KLQERVKILE GVAAKRTVES MVVVKKSQII VDGNDGDGNE  180
SSSDVDDNAA SNNNGSLPEI EIKMSEKTLL LRVHCEQQRG TLRKLMAEIH KHEMNITNFS  240
VIPFESLTLE ITIVAQMEKG FKKTWKILLE LFAPWSKWRG ILHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188105KRRPDQVQDHIIAERKRR
2101106ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670988.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0722e-45BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0J8B7C81e-105A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010670988.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-45bHLH family protein