PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_047650_jrpi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 601aa    MW: 67120.5 Da    PI: 7.8833
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_047650_jrpi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24113214199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Bv2_047650_jrpi.t1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGVTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLIAGDSIVFL- 200
                         89****************************986445444..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +++++ l+v+++r 
  Bv2_047650_jrpi.t1 201 -RTENGDLFVGIRRP 214
                         .4588889****985 PP
2Auxin_resp109.24.2e-36265348183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa  a+ +++FevvY+Prast+eF vk++ v++a++ ++++GmRfkmafetedss++++ +Gtv+ v+ +d v+WpnS+Wr+L+
  Bv2_047650_jrpi.t1 265 AAYLAADGKPFEVVYYPRASTPEFFVKTAAVRAAMRLQWCAGMRFKMAFETEDSSRISWfMGTVSCVQVVDHVHWPNSPWRLLQ 348
                         56789999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-30103213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-37104217IPR015300DNA-binding pseudobarrel domain
CDDcd100178.62E-21112213No hitNo description
SMARTSM010192.9E-21113215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253113215IPR003340B3 DNA binding domain
PfamPF023627.0E-22113213IPR003340B3 DNA binding domain
PfamPF065073.4E-31265348IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MNEVECCLDP QLWHACAGGM VQMPVINSKV IYFPQGHIEH AQVNIDLRKY PKIPPLIPCK  60
IIGIKYLANY ESDEVYAKVR LVPLRGNEFD TTCDDGFVGN NEMEEGSEKP VSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG VTWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LIAGDSIVFL RTENGDLFVG IRRPKRELLT CGSAYGGFAA FLRNEENNKI  240
MARNLEGMNS GNNTEKVRAE SVVEAAYLAA DGKPFEVVYY PRASTPEFFV KTAAVRAAMR  300
LQWCAGMRFK MAFETEDSSR ISWFMGTVSC VQVVDHVHWP NSPWRLLQVA WDEPDLLQNV  360
KRVNPWSVES VASMPTVHMS PFSPPRKKLR VSQVPEIPFA DQYLLPTFPN SAYNPSGSVF  420
GLAEVPAGVQ GARHAHFRQF LSDHLNKVNY SSLLTNGPEL KSLHCGISAK HKIRENISSF  480
LTMATLKESP KENDMLTPKF MLFGKPILTK QQISQSSSSD SMRTVSDSNL EKTGNNASED  540
SNDTLNKPSG GNFPCKVFME SEDVGNTLSL SSLGTYDGLY KKIAHHIWQG KILEAEQCAL  600
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-81837051389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693393.10.0PREDICTED: auxin response factor 18 isoform X1
RefseqXP_010693394.10.0PREDICTED: auxin response factor 18 isoform X1
RefseqXP_010693396.10.0PREDICTED: auxin response factor 18 isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9QUC10.0A0A0K9QUC1_SPIOL; Auxin response factor
STRINGXP_010693393.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]