PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_047180_jawt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 531aa    MW: 58184.8 Da    PI: 8.5508
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_047180_jawt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30180239159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+++d +++++tYeg+Hnh+
  Bv2_047180_jawt.t1 180 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCSNDMSILITTYEGTHNHP 239
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31165239IPR003657WRKY domain
SuperFamilySSF1182905.89E-27173240IPR003657WRKY domain
PROSITE profilePS5081127.68175241IPR003657WRKY domain
SMARTSM007743.1E-36180240IPR003657WRKY domain
PfamPF031066.6E-27181239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MIDVKEENVR LKKMLERIEN DYRSLQLRFF DILQHERSPS ITMSENKSLT TETRKEEEEE  60
EPEVSLSLGF QVLNKRKKDD NNNTNSSTSS VVKEDTKLMS EGLSLGFGRK SPPTSDLSDK  120
ESGKSTEIDD AKEDGVGDTW RPSKLLKTMK DGVEEDEPSQ PNITKRARVS VRARCDTPTM  180
NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP SCPVRKQVQR CSNDMSILIT TYEGTHNHPL  240
AVAATAMAST TSAAASILLS GSSTSQAGLS SSAPSTMITT NLNGLNFTLY NNSNTGQFNL  300
PSSSSPTPPT ITLDLTCTPP SHFNKTSHIT SNNFLQSPSH YSSRSLDFSS ETKTIFPISW  360
SNTNSLNYGL LPLNKPPMGS INFGKPTHNE PILSHAKFLE RINQATTSSS SSQQLLTETL  420
TKVLTSDPSF QSAVAAAISS MVGSNNNNIT HINRASSESS TQNLKWVDQV QGISTSPLSH  480
HHQNGKGCAP TFLNQPTSST SKAQSARNFM FLQPPFPFSL SKSSSSTNLR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20167240173WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5887134e-31JX588713.1 Gossypium hirsutum clone NBRI_GE23218 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693337.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A0J8E7T80.0A0A0J8E7T8_BETVU; Uncharacterized protein
STRINGXP_010693337.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.18e-66WRKY DNA-binding protein 72