PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_046650_xzdt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 387aa    MW: 43808.4 Da    PI: 7.9329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_046650_xzdt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.8e-52161422128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPtdeelv +yLk+k+ +++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d+++
  Bv2_046650_xzdt.t1  16 LPGFRFHPTDEELVGFYLKRKILQQSLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTCAGFWKATGTDRPI 105
                         69***************************.89***************9888999************************************* PP

                 NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl
  Bv2_046650_xzdt.t1 106 YSSdGAKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                         **955566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5714173IPR003441NAC domain
PROSITE profilePS5100556.68615173IPR003441NAC domain
PfamPF023652.6E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEEKNNEVDK VEDVILPGFR FHPTDEELVG FYLKRKILQQ SLPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TCAGFWKATG TDRPIYSSDG AKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSLADASP PKKFYDKSYP ANDSWAICRI FKKTNTMAQR  180
ALSHSWVSQL PETTTTTTTD MFNQGSNIIT SQFSPENNIS CTTEAVQLCN NTDLQQHNTT  240
SSPANCFSTL DQYKHIANPT VSKLSVIPTS FTDFPNNLIF PTAEVSAMLL NLSPVFTSDV  300
AKITDTIEFG GSQQLFNGFP MSLSPNIEAE DQLSFRKSHN QQWNSIRSLG FPFNLPPSIS  360
NSGTLSWDSA PCPSELSTSY SSNKCYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-521717517170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693234.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-103FEZ_ARATH; Protein FEZ
TrEMBLA0A0K9QFN00.0A0A0K9QFN0_SPIOL; Uncharacterized protein
STRINGXP_010693234.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-104NAC domain containing protein 94
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]