PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_045220_iddq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 277aa    MW: 31832.6 Da    PI: 10.4548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_045220_iddq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15241061194
                         HHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  11 lksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         + ++ +++p +f+e+       + +++es+ lt ed+  r W vkl  ++++  + +++GWkeF+  ++L++gDf+vF+++   +f + v
  Bv2_045220_iddq.t1  24 FFLNTFSIPVSFMEHLemktklKDDPPESVVLTTEDQPHRHWIVKL--EGGR--H-FKDGWKEFCLHHDLQVGDFLVFTHQ--LNFIFQV 106
                         556789*******66699999977888999999999999*******..5554..4.899********************64..3443444 PP
2B3521.3e-16181260787
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +s + k++ ++lpk f++++g+++ ++  ++l   +g+ W+vkl+yrk++g+ ++ +GWk+   an+L+ +D++ F+l +r
  Bv2_045220_iddq.t1 181 TSFAIKRSTIYLPKGFVRSCGLIN-KNCFVKLIYGDGKAWKVKLSYRKYDGQAYIHGGWKQLQAANNLRPRDIICFQLLKR 260
                         667789999***********8885.5568************************************************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.46214112IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-1514110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1415111IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.7E-917112IPR003340B3 DNA binding domain
PfamPF023623.0E-122499IPR003340B3 DNA binding domain
CDDcd100171.20E-1125110No hitNo description
SMARTSM010198.5E-11175272IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603175277IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-15178266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-15179266IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-16179261No hitNo description
PfamPF023623.7E-13180260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRSSSKFNSS CNNNARFMQP LLDFFLNTFS IPVSFMEHLE MKTKLKDDPP ESVVLTTEDQ  60
PHRHWIVKLE GGRHFKDGWK EFCLHHDLQV GDFLVFTHQL NFIFQVSVYN AATACQRCYS  120
SSNSHQQLKS IHKPTGSKTK KVRLKPNSRD RISGKRKARE AQAQATPTAE GQDIYGQITL  180
TSFAIKRSTI YLPKGFVRSC GLINKNCFVK LIYGDGKAWK VKLSYRKYDG QAYIHGGWKQ  240
LQAANNLRPR DIICFQLLKR GRWPIMKCHK LSSGNES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693056.10.0PREDICTED: uncharacterized protein LOC104906051
TrEMBLA0A0J8BDH70.0A0A0J8BDH7_BETVU; Uncharacterized protein
STRINGXP_010693056.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-30B3 family protein