PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_045200_qksd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 278aa    MW: 32087.7 Da    PI: 9.3002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_045200_qksd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15291091499
                         T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + +++p +f+++   ++  +  k++ l++e  r+W vk+  ++++  + +++GW+eF+  ++Lk+gDf+vF+++  ++f ++v+vf++
  Bv2_045200_qksd.t1  29 NTFSIPVSFLKRLdeELHGHLLKEVELMTEPQRRWVVKI--EGGR--H-FKDGWQEFCLHHNLKVGDFLVFTYQ--TDFLFHVSVFDH 109
                         6799******9999866666889****************..5554..4.899********************85..57888**99986 PP
2B346.85.5e-15171255490
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         v+++ +++++++++lp +f+++ g+ + ++  +tl d +  sW+ kl++rk  ++ ++ +GWk F  an Lk g ++ F+l ++ ++
  Bv2_045200_qksd.t1 171 VTLTLSSFNRKIIYLPMRFVRSSGLLN-RNCNITLVDGEEMSWKAKLNFRKDNSQPYIVQGWKYFQAANCLKPGNVLSFQLLED-GT 255
                         566899999**************7764.4458******************9999999999********************8763.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1616109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.99816110IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-1616109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-1418108No hitNo description
SMARTSM010197.2E-1319110IPR003340B3 DNA binding domain
PfamPF023624.2E-1229109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14161259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-17164259IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-17167263No hitNo description
PROSITE profilePS5086311.744168265IPR003340B3 DNA binding domain
SMARTSM010192.7E-11169265IPR003340B3 DNA binding domain
PfamPF023621.6E-12171259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQKRSSQEKL SSCCNNVRFM QPLIPGFINT FSIPVSFLKR LDEELHGHLL KEVELMTEPQ  60
RRWVVKIEGG RHFKDGWQEF CLHHNLKVGD FLVFTYQTDF LFHVSVFDHA TACQRHYPPS  120
SHQHHLNGVK GSGKKRGLKL NTTCKRRQLE AEVAATEVPS SDQNQFPSCQ VTLTLSSFNR  180
KIIYLPMRFV RSSGLLNRNC NITLVDGEEM SWKAKLNFRK DNSQPYIVQG WKYFQAANCL  240
KPGNVLSFQL LEDGTVPILK CYRLDQQTSD RSQVPPEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693056.10.0PREDICTED: uncharacterized protein LOC104906051
TrEMBLA0A0J8BH560.0A0A0J8BH56_BETVU; Uncharacterized protein
STRINGXP_010693056.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-35B3 family protein