PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_042360_goyn.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YC
Protein Properties Length: 280aa    MW: 30828.1 Da    PI: 4.7339
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_042360_goyn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.14.6e-196861898
               NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                        ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+    +++++ +  +fdfl d+v +
  Bv2_042360_goyn.t1  6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKNCIHSFSMFDFLKDVVSK 86
                        5789**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-26372IPR009072Histone-fold
SuperFamilySSF471133.83E-20389IPR009072Histone-fold
PfamPF008084.2E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK  60
TMSSLHLKNC IHSFSMFDFL KDVVSKVPDY GNSDANADDR TAPKRRKSAV DEYHDSDEDS  120
KKSRMQEITH ASSSGRGRGR GRGRGRGRGR PPLERDPPSH HEMEAEPSTS FEPINKPSPI  180
QVPNTDDDPN KPDPMKESPV VGDGGDAAIR NFDLNAAVAE NQDIGPTVTA AENAAVASAD  240
PAPESKNEEL VSEVDGMAID PHQIAQFNSR IEDDEDYDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139148RGRGRGRGRG
2139149RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670583.10.0PREDICTED: dr1-associated corepressor
TrEMBLA0A0K9RC391e-152A0A0K9RC39_SPIOL; Uncharacterized protein
STRINGXP_010670583.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-66nuclear factor Y, subunit C11