PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_042360_goyn.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NF-YC | ||||||||
Protein Properties | Length: 280aa MW: 30828.1 Da PI: 4.7339 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.1 | 4.6e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ +++++ + +fdfl d+v + Bv2_042360_goyn.t1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKNCIHSFSMFDFLKDVVSK 86 5789**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.83E-20 | 3 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TMSSLHLKNC IHSFSMFDFL KDVVSKVPDY GNSDANADDR TAPKRRKSAV DEYHDSDEDS 120 KKSRMQEITH ASSSGRGRGR GRGRGRGRGR PPLERDPPSH HEMEAEPSTS FEPINKPSPI 180 QVPNTDDDPN KPDPMKESPV VGDGGDAAIR NFDLNAAVAE NQDIGPTVTA AENAAVASAD 240 PAPESKNEEL VSEVDGMAID PHQIAQFNSR IEDDEDYDEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-23 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 148 | RGRGRGRGRG |
2 | 139 | 149 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010670583.1 | 0.0 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A0K9RC39 | 1e-152 | A0A0K9RC39_SPIOL; Uncharacterized protein | ||||
STRING | XP_010670583.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 5e-66 | nuclear factor Y, subunit C11 |