PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_041790_ncxt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 340aa    MW: 37922.4 Da    PI: 9.5672
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_041790_ncxt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.89.2e-1640123186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v  L+ea+++++   +r+klk+++We+v+k++      ++  ++++qCk+k+e+++kry+ + +++        s++p+f++l+
  Bv2_041790_ncxt.t1  40 EWSEGAVSSLLEAYESKWILRNRAKLKGQDWEDVAKHVscrfNNTKSPKTQTQCKNKIESMKKRYRSESATADT------SSWPLFSRLD 123
                         5*************************************999999999********************9999986......57*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1938125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MERETNQDDQ NPSHTKLEPS PRKPLLVSSG GGGDRLKRDE WSEGAVSSLL EAYESKWILR  60
NRAKLKGQDW EDVAKHVSCR FNNTKSPKTQ TQCKNKIESM KKRYRSESAT ADTSSWPLFS  120
RLDNLLRGTG GSTSALTPAQ SSPMKTIAVA SNPSLVLESG SVAQPLPPPV PPPALSPRQN  180
SPPVELAQNS HESNGVEPMI KEDDGVTAKV SDQVSDKNHN NDHIETDSST PALYSDDKDG  240
PKFKKTMKMK RKKRRREDSN SWDDVADSIR WLAEAVVRSE QVRMDTMREL ERIRVEAETK  300
RGEMDLKRTE IIANTQLEIA RLFASTAGKN VDSSLRIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249255KRKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670500.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0K9R5821e-174A0A0K9R582_SPIOL; Uncharacterized protein
STRINGXP_010670500.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-95sequence-specific DNA binding transcription factors