PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_040370_dcmm.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 445aa    MW: 48840.6 Da    PI: 6.0757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_040370_dcmm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-18552148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  Bv2_040370_dcmm.t1  5 KGPWTPEEDQKLLAYIEEHGHGNWRALPTKAGLQRCGKSCRLRWTNYL 52
                        79********************************************97 PP

2Myb_DNA-binding52.61e-1658103148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Bv2_040370_dcmm.t1  58 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 103
                         89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.145156IPR017930Myb domain
SuperFamilySSF466896.74E-31199IPR009057Homeodomain-like
SMARTSM007177.9E-15454IPR001005SANT/Myb domain
PfamPF002491.2E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-25659IPR009057Homeodomain-like
CDDcd001676.55E-12752No hitNo description
PROSITE profilePS5129421.09657107IPR017930Myb domain
SMARTSM007171.2E-1657105IPR001005SANT/Myb domain
PfamPF002495.6E-1658103IPR001005SANT/Myb domain
CDDcd001672.14E-1160103No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2660107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010091Biological Processtrichome branching
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGLKKGPWTP EEDQKLLAYI EEHGHGNWRA LPTKAGLQRC GKSCRLRWTN YLRPDIKRGK  60
FSLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAKM GIDPVTHKPK  120
HDALFAAIDG GKQSKNAANL SHMAQWESAR LEAEARLARQ SKIRLPDNNN SGDQVHINEH  180
NQIVPSVSVA PLSSSSSTSA HHYFGTNAAW HSVWPNFSNN TSGNNNNNDQ GFMSIGMGNG  240
ITSTGGGIVG GVGVGLESPT STLSFSENAP PVVPTMETGG VIEFMRNSSQ ENDHDKMVKK  300
EDNHVHEWKR GFDNGIEINS LSFSPTSAGF NDIIALSLDH ARETGGDDED EDEDDDHSHS  360
FMEGFTELLL STNNNASITT PTTKDNTICG EKSVADEGGD ENNNSIRSSG GTTSSGGSDY  420
YEDNKTYWNS ILNLVNSSPS HSPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2531075108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670239.10.0PREDICTED: transcription factor MYB36-like
TrEMBLA0A0K9QEU91e-163A0A0K9QEU9_SPIOL; Uncharacterized protein
STRINGXP_010670239.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-89myb domain protein 106