PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_040370_dcmm.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 445aa MW: 48840.6 Da PI: 6.0757 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl Bv2_040370_dcmm.t1 5 KGPWTPEEDQKLLAYIEEHGHGNWRALPTKAGLQRCGKSCRLRWTNYL 52 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Bv2_040370_dcmm.t1 58 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 103 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.145 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 1 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-15 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-25 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.55E-12 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 21.096 | 57 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 58 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-11 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 60 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MGLKKGPWTP EEDQKLLAYI EEHGHGNWRA LPTKAGLQRC GKSCRLRWTN YLRPDIKRGK 60 FSLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAKM GIDPVTHKPK 120 HDALFAAIDG GKQSKNAANL SHMAQWESAR LEAEARLARQ SKIRLPDNNN SGDQVHINEH 180 NQIVPSVSVA PLSSSSSTSA HHYFGTNAAW HSVWPNFSNN TSGNNNNNDQ GFMSIGMGNG 240 ITSTGGGIVG GVGVGLESPT STLSFSENAP PVVPTMETGG VIEFMRNSSQ ENDHDKMVKK 300 EDNHVHEWKR GFDNGIEINS LSFSPTSAGF NDIIALSLDH ARETGGDDED EDEDDDHSHS 360 FMEGFTELLL STNNNASITT PTTKDNTICG EKSVADEGGD ENNNSIRSSG GTTSSGGSDY 420 YEDNKTYWNS ILNLVNSSPS HSPMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 3 | 107 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010670239.1 | 0.0 | PREDICTED: transcription factor MYB36-like | ||||
TrEMBL | A0A0K9QEU9 | 1e-163 | A0A0K9QEU9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010670239.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 6e-89 | myb domain protein 106 |