PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_040120_xfin.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 498aa    MW: 54554 Da    PI: 8.9614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_040120_xfin.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.4e-34225281259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgse+prsYYrCts++Cpvkkkvers  d++++ei+Y+g+Hnhe
  Bv2_040120_xfin.t1 225 DDGYNWRKYGQKQVKGSEYPRSYYRCTSPNCPVKKKVERSF-DGHITEIIYKGQHNHE 281
                         8****************************************.***************8 PP
2WRKY104.75e-33391449159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d ++v++tYeg+Hnh+
  Bv2_040120_xfin.t1 391 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCKVRKHVERASTDASAVITTYEGKHNHD 449
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.684219283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-30221283IPR003657WRKY domain
SuperFamilySSF1182901.83E-26222283IPR003657WRKY domain
SMARTSM007742.2E-37224282IPR003657WRKY domain
PfamPF031061.5E-25225281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-36376451IPR003657WRKY domain
SuperFamilySSF1182908.89E-29383451IPR003657WRKY domain
PROSITE profilePS5081137.723386451IPR003657WRKY domain
SMARTSM007742.2E-38391450IPR003657WRKY domain
PfamPF031061.6E-25392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSDFKDIHKF FGQQQNQQQR PRTTISQKSA PADHSLYTGA PSPSPGSLSN LFSDPFPDND  60
FRSFSDLLAG AIATHLPASG ELNSVSENWG NDNKLGDRRE NGNGNGGGSS GFKQNRPGNL  120
VLPPVAPVFN ISPGFSPSAF LTSPTFLSPL GLSPQQTLAH FTAQAAISQS HLNIQPDTNP  180
PPSMATYQPS IFNASSRQQL SEHPNLLERR APSNNFPIAV DKPADDGYNW RKYGQKQVKG  240
SEYPRSYYRC TSPNCPVKKK VERSFDGHIT EIIYKGQHNH ERPQTGRRPA NKDNSGHGLI  300
PGDGFGNAIW SGGVGREFDS AQATSMQLNG PSDSEESGEN SQQFGDDYDY NDEPNPKRRN  360
AGAGQSDAAF THRTVTEPKI VVQTRSDVDL LDDGYRWRKY GQKVVKGNPN PRSYYKCTTV  420
GCKVRKHVER ASTDASAVIT TYEGKHNHDV PATRGGISAA NIQAAQMKLH NNSVGQMNFG  480
SNDQRPITLR LKEEQLLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37225452878Probable WRKY transcription factor 4
2lex_A3e-37225452878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670218.20.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-119WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0K9QGS90.0A0A0K9QGS9_SPIOL; Uncharacterized protein
STRINGXP_010670218.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-120WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]