PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_038830_huqy.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 37269.5 Da PI: 6.5023 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv ++ +G +W+++++ g+ R++k+c++rw +yl Bv2_038830_huqy.t1 13 RGLWSPEEDEKLVSHITIHGHSSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.4e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+ ++++++ lG++ W+ Ia++++ gRt++++k++w++ Bv2_038830_huqy.t1 66 RGSFTEEEERSIIEVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.68 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-10 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.693 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-16 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-12 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVSHITI HGHSSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EEEERSIIEV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL 120 DPNTHNLLPS NKKKSKTSNK TTKFPNYHHP ISSNSTTLVF SNDHDQSQTC YSPNDKTVLQ 180 NTINFDCNSN VTQVYDNNAP ITELSTQFLA SSSSMNISNS FSNDVNLCEY VVDEDSIWST 240 TTTSLENFEQ PTEITQVMVQ QDTIGSDQDL DTSLFNMLSL NYGFEDHDFP SNIVRSTGVY 300 DDMASGMDQV AWCNKSITSP SLNNMSYLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-32 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010670059.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
TrEMBL | A0A2R6QMA1 | 9e-92 | A0A2R6QMA1_ACTCH; Transcription factor like | ||||
STRING | XP_010670059.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-84 | myb domain protein 67 |