PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_036180_izat.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 1608aa    MW: 174794 Da    PI: 5.9964
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_036180_izat.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-08812853346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT eE e++ d  + +G++ + +Ia+ +  ++t  +c+++++k
  Bv2_036180_izat.t1 812 PWTIEEKEIFMDKLATHGKD-FPKIASFLE-HKTTADCIEFYYK 853
                         8*****************99.*********.***********98 PP
2Myb_DNA-binding22.23.3e-0710241063445
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                          WT +E  l+v+a+  +G++ +  I+r +  ++++ qck ++ 
  Bv2_036180_izat.t1 1024 WTDDEKSLFVRAFSSHGKD-FLMISRFVR-TKSRDQCKVFFS 1063
                          *****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.18E-14796857IPR009057Homeodomain-like
PROSITE profilePS5129315.497808859IPR017884SANT domain
Gene3DG3DSA:1.10.10.607.6E-5809853IPR009057Homeodomain-like
SMARTSM007177.9E-7809857IPR001005SANT/Myb domain
PfamPF002491.2E-5812853IPR001005SANT/Myb domain
PROSITE profilePS5129312.06310191070IPR017884SANT domain
SMARTSM007172.6E-510201068IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-910221070IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1608 aa     Download sequence    Send to blast
MPPEPLPWDR KELFRERNHG HEFGSGPPSS RWRDSSSSSS YAGSRNTNNN NNNNEYSPRW  60
GFPSSEFRRP PGHGKQGGWH MYSEDHGYST PRSSDRFLDD DVFRPSGVRG DGRYSRGYRE  120
NRSHFGQKDW RSHSWEANHH HSAPSNGVVR PHIINDQRSV DSPMRASHPH SDTCDQVHTK  180
DQTDKMSDAN GSGMGQRGDK ENLLGSVDWK PLKWSRSGSL TSRGSGFSHS SSSKSMGGES  240
SDVKVDLPPK NVTPVRSPSG DAVACTPSAA PLEDTSSRKK PRLGWGEGLA KYEKKKVGPE  300
DNVNKAGNAT SLGNVEPSHS LASNMADKSP KVMGFSDCSS PATPSSFACS SSPGLEEKTY  360
GKAIDADGDA SNFSVSSMPV PEPEPEPQSQ PEASHFTLEK LELNSITNLG SLLSELLQVD  420
DQCSHDSGFM RSSASNKLLL WKGDISKTLE LTETEIDSLE NELTSLKSDT VQTLDCPAAP  480
ASSNSRPVDY KDGPRDVVNV FPRPEPLEVV LNGDIMEDRP PCDDDRGLQA ESKDEDIDSP  540
GTATSKFVES PLQKSVSLEV CKNSSAETGF LEFTKSKIEP ASCVDEADVG TSCQGHDRIL  600
DQDDNSIALG IEQPVICDNM EDNRYDAILG SNKESADRAA EALRKLLPHS DYSVEANRGS  660
CLPADSTIKE KFLKRKRFLR FKERVLSLKY RAFHHLWKED LRLLSLRTHR AKPHKKLDLS  720
SRSLQIGSQK HRSSIRSRFA SPAGSLSLVP TTEIINFTGK LLSDSEVKVY RSSLKMPPMI  780
LDDKEKMARF VSSNGLVEDP CAVEKERALI NPWTIEEKEI FMDKLATHGK DFPKIASFLE  840
HKTTADCIEF YYKNHKSECF QKIKNLEGKK QGKPLSSNTY LVTSGKKWSR EMNAASLDIL  900
GAASVIAAQA DQDFETSKLL LGKSSNRKSR ESDGNIEASS SFYGAEHERE TAAADVLAGI  960
CGSLSSEAMS SCITSSVDPV EGNQDWKHQK IGSIRRPLTP EVTQNVDDDT CSDESCGEMD  1020
PADWTDDEKS LFVRAFSSHG KDFLMISRFV RTKSRDQCKV FFSKARKCLG LDTLQTGSGI  1080
GGIHASIDGN GEGSDNDDGG GIAETGSIVC SDKSGSRIDE DLLLHVNQDV SKPEAAVADL  1140
NISEDNCGPG QLDHKDAGLG LEDLLPHGHL ADVSGPIVSS GVVDVLVKAS VDTQRSGIHL  1200
IVQDDKSKMN AVNCKSAAEA MPHVAGVAMD MEAGSGISNR KSEVHVTSVP IELSSPGDGL  1260
FRPSASGDNV HPLQSGSSMM NEGEPHRDLK GFPLDLSIKA ELHDVITHTV GSESIDHSFQ  1320
DSFLRKCSRT ASHSVAELPL LQQREGGLGS SFSSKTEKPG RNGDVKLFGK ILSKPSSDEK  1380
ARHHSASCGK FDMMKLATNQ DLKGQTNSTC LADDHNSFLG LENVPIRSYG FWDGTKIQTG  1440
FSSLPDSALL LAKYPGAFTN YSKLSEQQPL QVGVDGNECN MNGACVFSPR EFSSSNCGSV  1500
IDYTVLRQDS LQPFRLDMKQ RHPDVFPEVQ RNGFEAVSSL QQQGKGTLNV VQGGDILGGS  1560
CSGISDPVAA LKLHYASHQY GGGGGGSGAV NGIIREESWS RQGGDVGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-19776861994NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-19776861994NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669645.10.0PREDICTED: uncharacterized protein LOC104886820
TrEMBLA0A0K9QWA80.0A0A0K9QWA8_SPIOL; Uncharacterized protein
STRINGXP_010669645.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-150MYB family protein