PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_035290_xyxs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 271aa    MW: 30718.7 Da    PI: 4.758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_035290_xyxs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.72.9e-1328104280
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                         Wt q  + L++    +e + +++ +  ++W  +++ + + g+ r+++qC+ kwe+l  +y  +ke++++  s+s s ++
  Bv2_035290_xyxs.t1  28 WTVQDMRILVNEIAAVEGDCQNALSTHQKWTIIAETCTALGVVRNANQCRRKWESLVADYNLLKEWKSN--SGSDSYWS 104
                         999****************************************************************98..45555676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-1127103No hitNo description
Gene3DG3DSA:1.10.10.605.5E-42884IPR009057Homeodomain-like
PROSITE profilePS500906.7712884IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MREADVGQPA ETSGSRCTRS HLQAAAVWTV QDMRILVNEI AAVEGDCQNA LSTHQKWTII  60
AETCTALGVV RNANQCRRKW ESLVADYNLL KEWKSNSGSD SYWSLRFERR KEAGLPLDFD  120
RDLYKAIEDF MKAPDRADTD PESDPEARDI DLLDAEESGP KPKRRRRWSV PQKWLSEERK  180
EIVLEAEPVK LGPPVVENME QILAAKLMEN TKLIDAILAG NFDEIVDEDL THGDEEALKI  240
ERVRHKADKL VACLGDLANN LEHLCGVVEK R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669503.10.0PREDICTED: uncharacterized protein LOC104886717
TrEMBLA0A0K9R3V41e-129A0A0K9R3V4_SPIOL; Uncharacterized protein
STRINGXP_010669503.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-51sequence-specific DNA binding transcription factors