PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_034570_jzgp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 562aa    MW: 61122.6 Da    PI: 8.5113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_034570_jzgp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05104126123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F r  nL+ H r H
  Bv2_034570_jzgp.t1 104 FICEICNKGFQRDQNLQLHRRGH 126
                         89*******************88 PP
2zf-C2H211.70.00082181203123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H + +
  Bv2_034570_jzgp.t1 181 WKCEKCSKKYAVQSDWKAHSKIC 203
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-5103126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.81E-7103126No hitNo description
SMARTSM003550.022104126IPR015880Zinc finger, C2H2-like
PfamPF121716.9E-5104126IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SMARTSM00355210146176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4169202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.81E-7176201No hitNo description
SMARTSM00355140181201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MMKGLGLDES MSNLTSTISG ETSISSNARN DQSSSTTTTN TNGNTNTNTM LYPQASSTSF  60
ASPHQLQPPQ PPPAKKKRGL PGNPDPDSEV IALSPKSLLA TNRFICEICN KGFQRDQNLQ  120
LHRRGHNLPW KLKQRPKDQI IKRKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK  180
WKCEKCSKKY AVQSDWKAHS KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI  240
NPLSTLPSVS HQSGAGGIAG LTTSSALSHL NLPPHLTSHH QLLQSLPLKR EPDHQHQHQH  300
PSFSVRSDIP PWLACPPPAQ QQTMVDGGTS QLDHQQQSHH MYTFQHQHHH QQPQYEQQSS  360
NNNALGPTLS SFQSPAHPQM SATALLQKAA EMGVTVSNQQ NQNQNQQVQH QNQVVLTNST  420
SCGLSVNQGF MEQVVSAADG EGASGGQSSL AALHDVMLMN SFQSTTSGGF DSSSFGDFHQ  480
AMQAPKSQQN GNGGGGGGSA GGGGGRGGSG SGNEGLTRDF LGLRTFTHKD FLNMAGFGHM  540
SSSSASFEQQ QQHDHQQNQT PW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34177238364Zinc finger protein JACKDAW
5b3h_F3e-34177238364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669389.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_010669390.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_010669391.10.0PREDICTED: protein indeterminate-domain 7
TrEMBLA0A0K9RXU80.0A0A0K9RXU8_SPIOL; Uncharacterized protein
STRINGXP_010669389.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-98indeterminate(ID)-domain 2