PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_034490_udsn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 352aa    MW: 39659.4 Da    PI: 4.6715
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_034490_udsn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.4e-34451362102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+++++ed++++ ++sws++ nsf+v+d+ +f++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+
  Bv2_034490_udsn.t1  45 FLIKTFDMVEDPSTDPIVSWSKTRNSFIVWDSYKFSTSLLPRFFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKH 126
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Bv2_034490_udsn.t1 127 LLKTIKRRRN 136
                         *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.4E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3441134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.3E-3741134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGVNVKQEE GTIPCNAGTP TNSSSSSNFS VRPMEGLHEM GPPPFLIKTF DMVEDPSTDP  60
IVSWSKTRNS FIVWDSYKFS TSLLPRFFKH NNFSSFIRQL NTYGFRKVDP DRWEFANEGF  120
LGGQKHLLKT IKRRRNVTQN VQHQGGACVE IGHYGLDGDM ERLRRDRNLL MAELVKLRQQ  180
QQFSREQLRT MEARLQSTER KQQQMMTFLA KALTNPAFVQ NLMQCKGSAF EGIEIGRKRR  240
LTASRSAESL QEEVFSAAVE ATEGLAAAES EIETLFSAAL DEESSITDIK EPMLEPNSIP  300
SPIGANLGNV GELNWEELLN EDLIGEGEQE LDVPIEDLVP ESSNWGQSYD QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-244313427129Heat shock factor protein 1
5d5v_B5e-244313427129Heat shock factor protein 1
5d5v_D5e-244313427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKTIKRR
2161166RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669381.10.0PREDICTED: heat shock factor protein HSF30 isoform X3
SwissprotP411521e-126HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0K9S2580.0A0A0K9S258_SPIOL; Uncharacterized protein
STRINGXP_010669379.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-114heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]