PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_034300_dzwp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 427aa    MW: 46728.7 Da    PI: 6.5893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_034300_dzwp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.55.6e-97204072374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsP 89 
                          +lLl+cA+ +s+g+l+ a  lL ++ el+sp  +p  R+aayf+  L+++l+    ++ l ++lp+s t  ++   +  ++l+ ++ ++P
  Bv2_034300_dzwp.t1  20 LSLLLKCAQLISAGNLTDAGDLLPEIFELSSPFNSPASRVAAYFATSLQSHLLLnfLSPPLHHQLPSSLTLISSqLNNFHSSLQSYNSLTP 110
                         689**********************************************998764567888999977666544437777888899****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         ++kfsh+taNqaI +a++g +rvH+iD+di+qGlQWp +++ LasR+++  s+++Tg+g+    s+e+l +tg rLa+fA+++gvpf+fn+
  Bv2_034300_dzwp.t1 111 FVKFSHFTANQAIFDALNGYDRVHVIDLDIMQGLQWPGFFHILASRTRKLTSVKLTGFGP----SSESLARTGARLAEFADSVGVPFRFNP 197
                         ************************************************************....9************************** PP

                GRAS 181 l..vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnse............. 251
                         +     +l++ +l++L+v+p  +E+++V++v+  h l+d s+s       ++k++++++P++v++veq+   +++ s+             
  Bv2_034300_dzwp.t1 198 VqgQIGNLSASDLSRLSVEPsdEEVTVVHCVH--HGLYDISGSHLG----TMKVLNRIRPRLVTMVEQDihvCQCHSSnnnnnnnndnint 282
                         8544448888899999**999999********..999988888888....99*****************7763332224567789999999 PP

                GRAS 252 .sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqakll 340
                          sF+erf+ al+yysalfd++ ++l ++s er+ vE+ l+g ei+n++a  g          +++W e l +aGF+p++l  + a+qa+ll
  Bv2_034300_dzwp.t1 283 tSFFERFVGALRYYSALFDAVGEGLDEDSVERHHVEHYLFGSEIRNILAGGGGGgGGGGDHGVRRWGEELIRAGFEPLSLAGSPAAQASLL 373
                         9************************************************9987745566778***************************** PP

                GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         l +++++gy++ ee+g+l lgWkd pL+++SaW+
  Bv2_034300_dzwp.t1 374 LGMFPWKGYTLMEENGCLRLGWKDLPLITASAWQ 407
                         *********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.431387IPR005202Transcription factor GRAS
PfamPF035141.9E-9420407IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLVTFPSSTH PNYSLHLHLL SLLLKCAQLI SAGNLTDAGD LLPEIFELSS PFNSPASRVA  60
AYFATSLQSH LLLNFLSPPL HHQLPSSLTL ISSQLNNFHS SLQSYNSLTP FVKFSHFTAN  120
QAIFDALNGY DRVHVIDLDI MQGLQWPGFF HILASRTRKL TSVKLTGFGP SSESLARTGA  180
RLAEFADSVG VPFRFNPVQG QIGNLSASDL SRLSVEPSDE EVTVVHCVHH GLYDISGSHL  240
GTMKVLNRIR PRLVTMVEQD IHVCQCHSSN NNNNNNNDNI NTTSFFERFV GALRYYSALF  300
DAVGEGLDED SVERHHVEHY LFGSEIRNIL AGGGGGGGGG GDHGVRRWGE ELIRAGFEPL  360
SLAGSPAAQA SLLLGMFPWK GYTLMEENGC LRLGWKDLPL ITASAWQLTD FSITNNGITK  420
NSNVLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1102540625378Protein SCARECROW
5b3h_A1e-1102540624377Protein SCARECROW
5b3h_D1e-1102540624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669360.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-135SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0K9R6860.0A0A0K9R686_SPIOL; Uncharacterized protein
STRINGXP_010669360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-130GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]