PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_032000_mewc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CPP
Protein Properties Length: 553aa    MW: 60298.2 Da    PI: 8.5445
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_032000_mewc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-1486125242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+Nk e+
  Bv2_032000_mewc.t1  86 KQKQCNCKNSRCLKLYCECFASGSYCDG-CNCINCHNKVEH 125
                         89**************************.********9886 PP
2TCR521.4e-16170209140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgCnCkks ClkkYCeCf+a+  Cs++CkC dCkN e
  Bv2_032000_mewc.t1 170 KHNKGCNCKKSGCLKKYCECFQANILCSDNCKCVDCKNFE 209
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-1785125IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.9686210IPR005172CRC domain
PfamPF036382.4E-1187122IPR005172CRC domain
SMARTSM011143.5E-20170211IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-13173208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAAVTAETTS SSSEFAPKKL ARQLDFTPVQ KSPVRQLPAQ QLPVQVVQRA VHHVPRPALT  60
AIVKPEPRSP QPQATALEVK DGTPKKQKQC NCKNSRCLKL YCECFASGSY CDGCNCINCH  120
NKVEHEASRQ EAIGATLERN PNAFRPKIAN SPHGSRMSKQ ETGPAQLVGK HNKGCNCKKS  180
GCLKKYCECF QANILCSDNC KCVDCKNFEG SEERRALFHG NNYNTMIYQA ANAAINGAIG  240
SSGYGNSPGS RKRRSQELFV YNNQPFQRNV QYIQGNHAKS SVPSVPSPRG ANTQAVSKVA  300
YRSPLAGVIQ PQDVKELCSL LVIVSKEAAK TFADKNSNID NQKKDDAKTH GCVESKEKVN  360
DRMESQIEIG AQQNVSIDEQ ALRICTGSSG LDESDALNGR PASPGTMALM CYEQEAVLME  420
EGSREFIVDS QNKAPETSCE QQITESFIEQ ERVVLTRFRD FLNRLITCGS IKETMCSSLT  480
KNEAGSQGQP LKTEVFIDGH LSNGMVKPLV PVANHTLSAR PGGVAFGSSN AFSQHIGLPI  540
ENGRLKPKSE KAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-34782192132Protein lin-54 homolog
5fd3_B6e-34782192132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254SRKRRS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668135.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-133TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9RGJ50.0A0A0K9RGJ5_SPIOL; Uncharacterized protein
STRINGXP_010668135.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-121Tesmin/TSO1-like CXC domain-containing protein