PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_031880_ghua.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 1050aa    MW: 116220 Da    PI: 4.9737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_031880_ghua.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.67e-194995148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Bv2_031880_ghua.t1 49 RGQWTPEEDEILCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 95
                        89*****************************9.************986 PP
2Myb_DNA-binding66.35.5e-21101147148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Bv2_031880_ghua.t1 101 KGPWSKEEDEIIVQLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 147
                         79******************************.*************97 PP
3Myb_DNA-binding52.31.3e-16153195145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE+++l++a++ +G++ W+   ++++ gRt++ +k++w+
  Bv2_031880_ghua.t1 153 KEAWTQEEELILIRAHQIHGNR-WAELTKYLP-GRTDNAIKNHWN 195
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7564495IPR017930Myb domain
SuperFamilySSF466893.88E-1645102IPR009057Homeodomain-like
SMARTSM007173.0E-154897IPR001005SANT/Myb domain
PfamPF002493.1E-164995IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2551111IPR009057Homeodomain-like
CDDcd001679.18E-145295No hitNo description
PROSITE profilePS5129433.40796151IPR017930Myb domain
SuperFamilySSF466898.24E-3298194IPR009057Homeodomain-like
SMARTSM007176.1E-20100149IPR001005SANT/Myb domain
PfamPF002494.0E-19101147IPR001005SANT/Myb domain
CDDcd001672.96E-17103147No hitNo description
Gene3DG3DSA:1.10.10.605.7E-28112155IPR009057Homeodomain-like
SMARTSM007177.7E-16152200IPR001005SANT/Myb domain
PROSITE profilePS5129420.331152202IPR017930Myb domain
PfamPF002491.3E-14153196IPR001005SANT/Myb domain
CDDcd001672.42E-12155195No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21156202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MESDRKIAVS LPPQPSSAPP TSLNGANNAF PRVRPMHGRT SGPTRRSTRG QWTPEEDEIL  60
CKAVQRFKGK NWKKIAECFK DRTDVQCLHR WQKVLNPELI KGPWSKEEDE IIVQLVNKYG  120
PKKWSTIAQH LPGRIGKQCR ERWHNHLNPS INKEAWTQEE ELILIRAHQI HGNRWAELTK  180
YLPGRTDNAI KNHWNSSVKK KLDSYIASGL LAQFQGLPVV SHQSQSMPAA SLLVQQSSGD  240
GSVFKDGVEV EQNSECSQVG CSQTASDISK TQEDFLVSEE SDLGKLHNAS PTASCSEQFY  300
TSVEDMTFTI PDIPYEFSCS SRYLEDNYSR EPGACASGSS SFGAFSLPNV TSVDLSADSS  360
SRNCFLADPN NETVPGPSQH SIEYDALASV NNVAARPDAT GQKQKTEEGC SQLVLHQEGG  420
DGFPVNLNNC SEIIDMDRYR EYISFQTFYQ LSETSGNVGL QPNHSLDTLV EASNCEHISS  480
IPTDVSDENG LMLSSQEYNQ VNDNLAVPQD IAKVDEEFGA HHNSGSPCSD HIIAGLTEHS  540
ELEKPSRLVP VGTFGAERSD SQPTHSNIVE RPVKATSERE AGTLCYEPPR FPSLDIPFFS  600
CDLAQSANDA HQEFSPLGIR QLMMSSMNSL TPFKLWDSPS SDDSPDRVLK SAAKTFSCTP  660
SILKKRHRDL LSPLSPFSER RCDKRTGSNV KQGFLWTSRL TNEFSRLDVM FDDTDECKIL  720
SLPSNDQNSC ASIEDKENIC PAFEGLNEEA KLNRVESGNR TSEENKDINR DGNLEQDVEK  780
SVRDDCASET PSRVLVECHL RDTQHSSLDR AEPARPETGD RSLEAHSLPN TSNQAAMSES  840
MVAKAKSVVS PPLLGLKKRN NDSALLCGQS VSAVNSVMVD SLVNEVGSEN LNIFGGTPFR  900
RSIESPSAWK SPWYFSSLVN CPKFDADITI EDIGIFMSPG DRSFDAIGLM KQINEQSADA  960
YADAREVLGS ETPESILRQR CSRFQNLESD SNKYFNSPLD SRFHSASNVS PERRVLDFSE  1020
CETPVKPMEK GQGVAAPSFS SPSCLLKSYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-70492026159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-70492026159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667918.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_010667925.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A0J8D1H60.0A0A0J8D1H6_BETVU; Uncharacterized protein
STRINGXP_010667918.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein