PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_031000_epcs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 390aa    MW: 43156.9 Da    PI: 6.1604
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_031000_epcs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-083393722154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Bv2_031000_epcs.t1 339 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 372
                         469*****************************87 PP
2ELK29.41.8e-10293314122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+ +++++++E++
  Bv2_031000_epcs.t1 293 ELKHELKQGYKDKIVDIREEIL 314
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-18126170IPR005540KNOX1
PfamPF037908.4E-17128169IPR005540KNOX1
SMARTSM012561.3E-28181236IPR005541KNOX2
PfamPF037911.8E-21185235IPR005541KNOX2
SMARTSM011885.1E-4293314IPR005539ELK domain
PROSITE profilePS512139.969293313IPR005539ELK domain
PfamPF037891.3E-5293314IPR005539ELK domain
PROSITE profilePS5007111.726313376IPR001356Homeobox domain
SMARTSM003892.4E-11315380IPR001356Homeobox domain
SuperFamilySSF466893.38E-16315379IPR009057Homeodomain-like
CDDcd000867.10E-12316377No hitNo description
Gene3DG3DSA:1.10.10.603.1E-25320377IPR009057Homeodomain-like
PfamPF059201.1E-17333372IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAYHHNQHLL QAEMAAQFAG DQTTSSNQQQ QQQQLQHHQP SWLTSALLGS SAGAGGASNF  60
LNLHSVDDSA AMSAIPSQHG KLTHNEDSGK PEIGDGEVSV GGGNSGGGGG EREGEQQQQQ  120
VNWQNAKFKA EILGHPLYEQ LLSAHVACLR IATPVDQLPR IEAQLTQSQN VVAKYSALGN  180
GHAMVGDDKE LDQFMTHYVL LLCSFKEQLQ QHVRVHAMEA VMACWEIEQS LQSLTGVSPG  240
EGTGATMSDD EDDPIDSDSN LFDGGLDGPD TMGFGPLIPT ESERSLMERV RQELKHELKQ  300
GYKDKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW PYPTEEDKAR LVQETGLQLK  360
QINNWFINQR KRNWHSNPSS STALKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12316380872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369389RKRNWHSNPSSSTALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665744.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0K9R9E20.0A0A0K9R9E2_SPIOL; Uncharacterized protein
STRINGXP_010665744.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-172KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]