PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_029900_mzjw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 263aa    MW: 28029.4 Da    PI: 8.9351
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_029900_mzjw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-41601591100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+
  Bv2_029900_mzjw.t1  60 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQVLQ 150
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+++++e
  Bv2_029900_mzjw.t1 151 AELNAVRAE 159
                         *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.61459160IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4160157IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSRERERFDE IGKKIRRESD AFAIIGGGGG GSGGAGGGRG GGRRHIQLGP PGTTLNTITP  60
CAACKLLRRR CAQECPFSPY FSPHEPQKFA SVHKVFGASN VSKLLMEVPE TQRADAANSL  120
VYEANVRLRD PVYGCMGAIS ALQQQVQVLQ AELNAVRAEI LKYKYREANH ISNTISTNNS  180
SSPASHNLAY FSSGAAVSIA VPPPLTQSIS APSPPPPPPP APPFHNLPPN SSLSSSMYTQ  240
PSSASPDHDH YSSISNENIS YFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-45531754126LOB family transfactor Ramosa2.1
5ly0_B7e-45531754126LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695789.10.0PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T51e-79LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A0K9QMH91e-105A0A0K9QMH9_SPIOL; Uncharacterized protein
STRINGXP_010695789.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-74LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]