PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_029400_xprd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 422aa    MW: 47173.4 Da    PI: 6.8247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_029400_xprd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-155299148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l ++  + G g+W+ Iar  g+ R++k+c++rw +yl
  Bv2_029400_xprd.t1 52 KGLWSPEEDEKLMNYMLRNGHGCWSDIARNSGLQRCGKSCRLRWINYL 99
                        678*******************************************97 PP
2Myb_DNA-binding47.34.7e-15105148146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+ l+++ + +lG++ W+ Ia++++ gRt++++k++w++
  Bv2_029400_xprd.t1 105 RGAFSPQEEHLILHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 148
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2974799IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2349102IPR009057Homeodomain-like
SuperFamilySSF466892.7E-2850146IPR009057Homeodomain-like
SMARTSM007177.1E-1151101IPR001005SANT/Myb domain
PfamPF002491.8E-135299IPR001005SANT/Myb domain
CDDcd001671.42E-95599No hitNo description
PROSITE profilePS5129424.263100154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-24103155IPR009057Homeodomain-like
SMARTSM007171.6E-13104152IPR001005SANT/Myb domain
PfamPF002493.4E-14105148IPR001005SANT/Myb domain
CDDcd001672.97E-9107147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRGPSSIGSN FNHSSMVKNE MKEKTVKCNH NNNNSKSSNN DSKKNNIVKL RKGLWSPEED  60
EKLMNYMLRN GHGCWSDIAR NSGLQRCGKS CRLRWINYLR PDLKRGAFSP QEEHLILHFH  120
SLLGNRWSQI AARLPGRTDN EIKNFWNSTI KKRLKQNNSS NNNNNMIVNN NNFSASLVDD  180
PSLLSDTIDL VAQNQHHNSY NIVGQELMLP SSMYDHENHH HHHHQSLMMT AAYNMCMDSS  240
ILSDSPSSPS MHTAASSITS ATTNQFDNSL PPLLEKNGYD IAFSMENFAD FVGCDQVVLH  300
DHHFVTPERI MCTSNGIVAA SAAATASIAA SMGTSDVNFP MIQRTTTFPK NTSINQIVIN  360
DNESWADMVN TNGNEGMINY GNNGNSNNNN NNGKEGNLKM GEWDSLESLL GDVSFPFLDF  420
QA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27471542108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695283.10.0PREDICTED: transcription factor MYB26
STRINGXP_010695283.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-67myb domain protein 46