PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_028090_josc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28690.6 Da PI: 8.9139 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Bv2_028090_josc.t1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 96.7 | 3.5e-32 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ es+++e+ kLk++ e+Lqr+qR+llGedL++L++keL qLe+qLe+slk+iRs+K++ +l+q+ +lq+ke++l e+nk+L+++l+ Bv2_028090_josc.t1 82 KPSKELESSYREYLKLKARHESLQRTQRNLLGEDLGPLNVKELDQLERQLESSLKQIRSTKTQSMLDQLTDLQNKEHALMEANKTLKTELD 172 4578899********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.969 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.32E-45 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-33 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.6E-27 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.244 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0071492 | Biological Process | cellular response to UV-A | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 PSMLKTLERY QKCSYGGVEV NKPSKELESS YREYLKLKAR HESLQRTQRN LLGEDLGPLN 120 VKELDQLERQ LESSLKQIRS TKTQSMLDQL TDLQNKEHAL MEANKTLKTE LDRIMVKDTQ 180 QFRQTWDGSE QNVHYGQQHA QSQGLFQPLD CNPTLQIGYN PESSEQMTVA TSHTQVPGFL 240 PGWMQGGCFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 5e-34 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-34 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-34 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-34 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694134.1 | 0.0 | PREDICTED: developmental protein SEPALLATA 1 isoform X4 | ||||
Swissprot | Q8LLR2 | 1e-135 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A0K9RQF5 | 1e-168 | A0A0K9RQF5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694117.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-122 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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