PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_027340_gixg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 281aa    MW: 31684.2 Da    PI: 6.5945
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_027340_gixg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH51.61.5e-16216241126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yktelC+ +++tGtC+yG++C+FaHg
  Bv2_027340_gixg.t1 216 YKTELCNKWQETGTCPYGPQCQFAHG 241
                         9************************9 PP
2zf-CCCH171e-05254279126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  + + tC+yG rC+F H+
  Bv2_027340_gixg.t1 254 YKTQVCRMVLSGATCPYGHRCHFRHS 279
                         8999999888877**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-19212248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-11212247IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-10215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765215243IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-13216241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-12249280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-8250279IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544253281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDYYKNDDDH ANNLNTSYCL FSTTSTSRPS TPSATATDAS VAAGSRHYRA RLILENHLYD  60
ELLSRYKLAI TRLREFSREA TALQEENEWL RLANEDLTRR LNEVLSVSEQ PCVGPVTGGW  120
STSTSGDQQN NVFGSSNSST RSVIDDDDEE VEEEDERVVL PKSISVRSSG FFKLVNLPTT  180
VMNQSRSPSQ HGNGTKLKVK KEESALEMDV FNQGMYKTEL CNKWQETGTC PYGPQCQFAH  240
GLSELRPVIR HPRYKTQVCR MVLSGATCPY GHRCHFRHSL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-23216279467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693523.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9R0X41e-107A0A0K9R0X4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010693523.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-57C3H family protein