PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_026510_xhwm.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29211.7 Da PI: 6.2445 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.6e-07 | 7 | 53 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT e d+ + a +++ + W + a+ ++ ++t ++k+++q Bv2_026510_xhwm.t1 7 TWTWEQDKAFEIALALYSHDnseeKWVKLASLVPGNKTILEIKHHYQ 53 7*****************99**************************9 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 102 | 147 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+++++ + +++G+g+Wk+Ia+++ k+R++ q+ s+ qky Bv2_026510_xhwm.t1 102 QPWTEEEHKQFLLGMEKYGKGDWKSIAKEFVKTRSATQVASHAQKY 147 79*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.61 | 1 | 56 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0037 | 4 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.21E-8 | 6 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00754 | 7 | 56 | No hit | No description |
PROSITE profile | PS51294 | 18.382 | 96 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.83E-16 | 99 | 151 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 100 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-13 | 100 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-15 | 101 | 151 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-14 | 102 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-9 | 103 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MANSSSTWTW EQDKAFEIAL ALYSHDNSEE KWVKLASLVP GNKTILEIKH HYQILLDDIE 60 AIESGNVALP SYTHTTTPCN ANHSTSPKKR NKESEWEARK GQPWTEEEHK QFLLGMEKYG 120 KGDWKSIAKE FVKTRSATQV ASHAQKYFKR QMKEKKDTKR WSIFDMPAPC SQGDGKSSGS 180 SSSSSINEYT RKEMETKYAT NDTKNQKVVE VQHLNPVINS LEYMSPPESC LVEHDFDIDL 240 EFEMNLQECL SQLPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010666611.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 3e-43 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0K9RJ37 | 1e-84 | A0A0K9RJ37_SPIOL; Uncharacterized protein | ||||
STRING | XP_010666611.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 1e-48 | MYB family protein |
Publications ? help Back to Top | |||
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