PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv2_026370_rgfy.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 267aa MW: 30974.9 Da PI: 6.7452 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 84.8 | 2.1e-26 | 2 | 133 | 27 | 137 |
TCP 27 ecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec.eaesssssasnsssg...............kaaksaa.ks 97 ++a++fFdLqd+LGfdk+skt+ WL+ ++k+ai+el+++ +s+++sec ++++++ ++++++++ + ++s++ k+ Bv2_026370_rgfy.t1 2 SIAREFFDLQDMLGFDKASKTLGWLFAKSKAAIDELVRSsncKSNTNSEChDHGHEHDQHEHEHEHehddddekksldhkkS-SSSKKrKN 91 69*************************************8776666688974444444444444445577887777655421.22222233 PP TCP 98 kksqksaasalnlak..esrakarararertrekmriknkln 137 k++ + +++n+a+ + r++ar rarertr+k+ ++++n Bv2_026370_rgfy.t1 92 KENCVVDVHHQNIANemKRREEARNRARERTRKKKLVDDHNN 133 33333333445555544455**************99887776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 22.255 | 1 | 37 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.5E-22 | 2 | 126 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MSIAREFFDL QDMLGFDKAS KTLGWLFAKS KAAIDELVRS SNCKSNTNSE CHDHGHEHDQ 60 HEHEHEHEHD DDDEKKSLDH KKSSSSKKRK NKENCVVDVH HQNIANEMKR REEARNRARE 120 RTRKKKLVDD HNNQLLHNHH HHHHHHQCVQ QDLLISQSSS SAAATPNNKY GLISKEVSVG 180 ESVEIKCNKS SSESSYNYNY EMLSLKDDQE HCNYYNDYLN KSASEYCNYG GINMLSSGFP 240 AVNIINLSTE IHINARPWDD YFDQVLH |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 108 | 125 | KRREEARNRARERTRKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019103776.1 | 0.0 | PREDICTED: transcription factor DICHOTOMA-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67260.2 | 8e-14 | TCP family protein |