PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_024970_jywu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 795aa MW: 89569.8 Da PI: 6.4796

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_024970_jywu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380.9	1.6e-116	412	782	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL cA+av s+d++ a+ lL+++++++sp+gd +qR+a+yf+ +L+arla+ ++ +y+ l + +++ ++ l +++f v+P+ Bv2_024970_jywu.t1 412 LRSLLSLCAQAVGSNDQRSANDLLKKIRQHSSPTGDGNQRMAHYFADGLEARLAGVGTPIYSCLLTGPAN---AVDILRGYHMFLAVCPFK 499 578999*****************************************************988888887...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k++++ N++I e +++++r+HiiD++i +G+QWp+L+q L+sRp+gpp++RiTgv++p++g ++++eetg+rL+++Ae++++pfefn+ Bv2_024970_jywu.t1 500 KIGNFFSNRTITEVAAKATRLHIIDIGIVYGFQWPCLFQRLSSRPGGPPKIRITGVDNPQPGfrPAKRVEETGQRLKNYAESFNIPFEFNA 590 *************************************************************************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 vak++e+l++e+L+++++E+l+Vn++++l+++++e++ +e +rd vL+lv++++P v++ + ns+ F +rf eal ++s+lfd l Bv2_024970_jywu.t1 591 -VAKKWETLTIEDLKIDSDEVLVVNSMFRLKYIPEETAMVECPRDMVLNLVRQIKPAVFIQGAVNGAFNSPFFITRFREALFHFSTLFDLL 680 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e++lpr+ +eri vE+e++gr+++nv+aceg+er+er et+++W+ r e+ GF+++pl+ ++++ ak ++ v+ + ++++e+ ++l+lgW Bv2_024970_jywu.t1 681 ETNLPRDLQERILVEKEIFGRQAMNVIACEGFERIERPETYKQWQVRNERIGFRQLPLNPEIVSMAKKRVKSVYHKDFSIDEDGHWLLLGW 771 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaW 373 k+r +++++ W Bv2_024970_jywu.t1 772 KGRIVYALTTW 782 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.724	386	763	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-114	412	782	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MDPQLEELYG TLHRIQFNDQ KVPILPNNNV VNTVRLQDSN VNLRFANPEL IPQNPDFNLV 60 VPSVGQGRQE SELSIHEDYD FSDVVLKYIN QVLMEEDEEE RSHVYHEPSA LEAAEKTLYE 120 VIGKQYPSTH DQYKLPDVKL DSWNTSGVSD GWNTNGVSDR ITDSYNYSAA SSSSDVVDSN 180 WSINHFGYNP VRTIDFSVPS VNPSLRPSYI SSNSKGRQYD SMLLNYEPSF SSASSAIGIA 240 DATAQSPVSA LNVSELFNDS QSMLQFQKGL DEASKFLPKA FLYKGVTNHA FSKKLEGAPP 300 NDSAVHLENK HSNKTPESMM SGKKHHTRDG LQLEERRENK QSAVTHISDE AVVRSEMWDK 360 VLLCSGGKND AALREALQSE KNKNTENAQA KESSSGRGRG KRKGSKREVV DLRSLLSLCA 420 QAVGSNDQRS ANDLLKKIRQ HSSPTGDGNQ RMAHYFADGL EARLAGVGTP IYSCLLTGPA 480 NAVDILRGYH MFLAVCPFKK IGNFFSNRTI TEVAAKATRL HIIDIGIVYG FQWPCLFQRL 540 SSRPGGPPKI RITGVDNPQP GFRPAKRVEE TGQRLKNYAE SFNIPFEFNA VAKKWETLTI 600 EDLKIDSDEV LVVNSMFRLK YIPEETAMVE CPRDMVLNLV RQIKPAVFIQ GAVNGAFNSP 660 FFITRFREAL FHFSTLFDLL ETNLPRDLQE RILVEKEIFG RQAMNVIACE GFERIERPET 720 YKQWQVRNER IGFRQLPLNP EIVSMAKKRV KSVYHKDFSI DEDGHWLLLG WKGRIVYALT 780 TWDPVSEDIL GANDE

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MDPQLEELYG TLHRIQFNDQ KVPILPNNNV VNTVRLQDSN VNLRFANPEL IPQNPDFNLV  60
VPSVGQGRQE SELSIHEDYD FSDVVLKYIN QVLMEEDEEE RSHVYHEPSA LEAAEKTLYE  120
VIGKQYPSTH DQYKLPDVKL DSWNTSGVSD GWNTNGVSDR ITDSYNYSAA SSSSDVVDSN  180
WSINHFGYNP VRTIDFSVPS VNPSLRPSYI SSNSKGRQYD SMLLNYEPSF SSASSAIGIA  240
DATAQSPVSA LNVSELFNDS QSMLQFQKGL DEASKFLPKA FLYKGVTNHA FSKKLEGAPP  300
NDSAVHLENK HSNKTPESMM SGKKHHTRDG LQLEERRENK QSAVTHISDE AVVRSEMWDK  360
VLLCSGGKND AALREALQSE KNKNTENAQA KESSSGRGRG KRKGSKREVV DLRSLLSLCA  420
QAVGSNDQRS ANDLLKKIRQ HSSPTGDGNQ RMAHYFADGL EARLAGVGTP IYSCLLTGPA  480
NAVDILRGYH MFLAVCPFKK IGNFFSNRTI TEVAAKATRL HIIDIGIVYG FQWPCLFQRL  540
SSRPGGPPKI RITGVDNPQP GFRPAKRVEE TGQRLKNYAE SFNIPFEFNA VAKKWETLTI  600
EDLKIDSDEV LVVNSMFRLK YIPEETAMVE CPRDMVLNLV RQIKPAVFIQ GAVNGAFNSP  660
FFITRFREAL FHFSTLFDLL ETNLPRDLQE RILVEKEIFG RQAMNVIACE GFERIERPET  720
YKQWQVRNER IGFRQLPLNP EIVSMAKKRV KSVYHKDFSI DEDGHWLLLG WKGRIVYALT  780
TWDPVSEDIL GANDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-51	412	782	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019107225.1	0.0	PREDICTED: scarecrow-like protein 33
Refseq	XP_019107229.1	0.0	PREDICTED: scarecrow-like protein 33
TrEMBL	A0A0K9RZZ5	0.0	A0A0K9RZZ5_SPIOL; Uncharacterized protein
STRING	XP_010690788.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-177	SCARECROW-like 14