PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_024590_wdyc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 416aa    MW: 45737.3 Da    PI: 5.1597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_024590_wdyc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183782147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Bv2_024590_wdyc.t1 37 RGPWSPEEDAILSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 82
                        89******************************.***********985 PP
2Myb_DNA-binding53.94.3e-1789133147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++++eEd++++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  Bv2_024590_wdyc.t1  89 RKPFSEEEDQIIISAHAIHGNK-WACIAKLLP-GRTDNAIKNHWNST 133
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8343287IPR017930Myb domain
SuperFamilySSF466892.02E-3134130IPR009057Homeodomain-like
SMARTSM007174.1E-163685IPR001005SANT/Myb domain
PfamPF002491.0E-173782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-263890IPR009057Homeodomain-like
CDDcd001673.23E-153981No hitNo description
SMARTSM007177.6E-1688136IPR001005SANT/Myb domain
PROSITE profilePS5129422.22488138IPR017930Myb domain
PfamPF002492.5E-1589133IPR001005SANT/Myb domain
CDDcd001673.09E-1291134No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2391137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSDQPMTIED PNDLTLPDAA VDTDETTATP SSASRVRGPW SPEEDAILSE LVSKFGARNW  60
SLIARGIPGR SGKSCRLRWC NQLDPCVKRK PFSEEEDQII ISAHAIHGNK WACIAKLLPG  120
RTDNAIKNHW NSTLRRRYDF GRSVGDTSID RNKASSEETV SGETNSFKHF DGRQDVNMVD  180
NQCHQSDYQA PVNENLLQSL QPENPPSIVY ENHFVVAHPP VIAHFVEQTE PPTLSRPVAR  240
VGAFNIYQPL SNLTPAVPRP KPVPVQGPLV NAFQPDLGIS KFLDGVQCEP IIPLRCGHGC  300
CSAPTGAESG NSLLGPEFIE YEEPPSFSSH ELASIATDLN NIAWIKSGLD SSSCARQMET  360
PIPRRDSQGT DNSMQCMQTN NVRFDEGRSK LMGMMTEVIS TQIPRQTVAL PAEVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-41361396109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690407.10.0PREDICTED: uncharacterized protein LOC104903953
TrEMBLA0A0K9S3S00.0A0A0K9S3S0_SPIOL; Uncharacterized protein
STRINGXP_010690407.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-101myb domain protein 109