PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_024260_oxkh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 276aa    MW: 31511.4 Da    PI: 7.8685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_024260_oxkh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-13128172347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+++++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  Bv2_024260_oxkh.t1 128 PWTEDEHKRFLLGLQKHGKGDWRNISRNFVISKTPTQVASHAQKY 172
                         8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.8932378IPR017884SANT domain
SMARTSM007178.4E-82476IPR001005SANT/Myb domain
PfamPF002492.0E-52874IPR001005SANT/Myb domain
CDDcd001673.82E-72874No hitNo description
SuperFamilySSF466893.59E-92881IPR009057Homeodomain-like
PROSITE profilePS5129417.855121177IPR017930Myb domain
SuperFamilySSF466892.09E-16122177IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-18124176IPR006447Myb domain, plants
SMARTSM007171.1E-10125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10125171IPR009057Homeodomain-like
PfamPF002491.9E-11128172IPR001005SANT/Myb domain
CDDcd001674.11E-9128173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGAIYPTSLF SNSSYNWLFP GECKSVIWTK DENKQFEKAL AIFDDHTPDR FSRIADMIPG  60
KSVLDVVKQY QELLEDVTDI EAGLVPIPGY LASPFTLEWV DNTRLDHFRK RSASMVRPHE  120
QERKKGVPWT EDEHKRFLLG LQKHGKGDWR NISRNFVISK TPTQVASHAQ KYFLRQSSGG  180
KDKRRPSIHD ITTDNLSDNT VLPISESDDQ KPRSILEHST ASFPLLQKSF NIMPKMLLDW  240
SNSNNGEAFM VFDSTHGRQN LYSNSYQGAS AYVGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-14281111193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690085.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RI921e-160A0A0K9RI92_SPIOL; Uncharacterized protein
STRINGXP_010690085.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]