PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv2_023500_uksi.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 27921.3 Da PI: 7.0118 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT++Ed l+++v q+G+++W++I++ ++ gR++k+c++rw + Bv2_023500_uksi.t1 17 KGSWTPQEDATLIKLVDQHGPRNWTLISEGIP-GRSGKSCRLRWCNQ 62 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 71 | 113 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede++++a+k +G++ W+ Ia+ ++ gRt++ +k++w++ Bv2_023500_uksi.t1 71 PFSPSEDEIIIQAHKAHGNR-WAVIAKLLP-GRTDNAIKNHWNST 113 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.445 | 12 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-31 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-16 | 16 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-18 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-14 | 19 | 61 | No hit | No description |
PROSITE profile | PS51294 | 21.623 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-15 | 71 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.77E-13 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MGTQNESQNG VVKDRVKGSW TPQEDATLIK LVDQHGPRNW TLISEGIPGR SGKSCRLRWC 60 NQLSPDVQHR PFSPSEDEII IQAHKAHGNR WAVIAKLLPG RTDNAIKNHW NSTLRRKRAH 120 EVGTELGEWK RQRVDSVSSE SNSGVGVVLE QEVDGGVEGS EGVETLLTLL PPGKSVIVPG 180 GGEREGEDQV MKGVGKGEEK SDHMIRCTVG RQDTCWINLM QSMIAEEVKN YMDRLVLNGD 240 GIGPKSDSQA HHK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-40 | 16 | 117 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-39 | 4 | 117 | 45 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-39 | 4 | 117 | 45 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-40 | 16 | 117 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-40 | 16 | 117 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010666145.1 | 0.0 | PREDICTED: myb protein | ||||
TrEMBL | A0A067LKB3 | 5e-81 | A0A067LKB3_JATCU; MYB family protein | ||||
STRING | XP_010666145.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-52 | myb domain protein r1 |