PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_023450_ijoy.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 203aa MW: 23657.7 Da PI: 8.8169 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.2 | 1.4e-15 | 13 | 94 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea ++ +++rg+l+ ++W evs+++ + + f+rs +qCk++++ l+k+yk +k+ + st+++fd+l+ Bv2_023450_ijoy.t2 13 CWSEESTATLIEAWGSRYLQSNRGNLRRNDWIEVSDAVnfAGKSFRRSDVQCKNRIDTLKKKYKVEKAKSPP------STWRFFDRLD 94 7*************************************999999*********************9999886......58*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-25 | 11 | 95 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
METLKQAGGR EDCWSEESTA TLIEAWGSRY LQSNRGNLRR NDWIEVSDAV NFAGKSFRRS 60 DVQCKNRIDT LKKKYKVEKA KSPPSTWRFF DRLDFLIGNV TREGESKLNS SESTESRGSG 120 DDVEEREREI VVKELANAME KFGEIYERIE NRKQEKVVEL ERLRLELVKE LEFQRMNLIA 180 DAQIRLEKFQ HCNKKSASSG KKL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010689426.1 | 1e-146 | PREDICTED: trihelix transcription factor ASIL2 isoform X3 | ||||
TrEMBL | A0A0K9QQJ3 | 9e-88 | A0A0K9QQJ3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689410.1 | 1e-143 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 2e-45 | sequence-specific DNA binding transcription factors |