PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_023450_ijoy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 210aa    MW: 24559.6 Da    PI: 8.3042
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_023450_ijoy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.5e-151394186
            trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                        +W+++ + +Liea  ++  +++rg+l+ ++W evs+++  + + f+rs +qCk++++ l+k+yk +k+ +        st+++fd+l+
  Bv2_023450_ijoy.t1 13 CWSEESTATLIEAWGSRYLQSNRGNLRRNDWIEVSDAVnfAGKSFRRSDVQCKNRIDTLKKKYKVEKAKSPP------STWRFFDRLD 94
                        7*************************************999999*********************9999886......58*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-251195No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
METLKQAGGR EDCWSEESTA TLIEAWGSRY LQSNRGNLRR NDWIEVSDAV NFAGKSFRRS  60
DVQCKNRIDT LKKKYKVEKA KSPPSTWRFF DRLDFLIGNV TREGESKLNS SESTESRGSG  120
DDVEEREREI VVKELANAME KFGEIYERIE NRKQEKVVEL ERLRLELVKE LEFQRMNLIA  180
DAQIRLEKFQ HCNKKSASSA CTFKQERNYS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689410.11e-152PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A0K9QQJ35e-85A0A0K9QQJ3_SPIOL; Uncharacterized protein
STRINGXP_010689410.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-44sequence-specific DNA binding transcription factors