PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_021800_gxac.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 405aa    MW: 46002.9 Da    PI: 6.6041
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_021800_gxac.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-093323672055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Bv1_021800_gxac.t1 332 YKWPYPSESEKVALAEATGLDQKQINNWFINQRKRH 367
                         4679*****************************885 PP
2ELK35.81.7e-12287308122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KYsgyL+sLkqE+s
  Bv1_021800_gxac.t1 287 ELKNHLLKKYSGYLSSLKQELS 308
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-21142186IPR005540KNOX1
PfamPF037903.3E-22143185IPR005540KNOX1
SMARTSM012567.1E-27194245IPR005541KNOX2
PfamPF037915.8E-24198243IPR005541KNOX2
SMARTSM011881.0E-6287308IPR005539ELK domain
PfamPF037898.1E-10287308IPR005539ELK domain
PROSITE profilePS5121311.243287307IPR005539ELK domain
PROSITE profilePS5007113.021307370IPR001356Homeobox domain
SuperFamilySSF466894.71E-20308383IPR009057Homeodomain-like
SMARTSM003893.4E-13309374IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-27312373IPR009057Homeodomain-like
CDDcd000866.57E-12319371No hitNo description
PfamPF059201.3E-16327366IPR008422Homeobox KN domain
PROSITE patternPS000270345368IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEDYNHELSE NSGAHQRRGN FSYVTSSILG PNNSSSTSPS SSYVGRSTTT PFFHHQSCFH  60
QQPPVVKTEA TTTQNQQQQQ QQQQHFSRFQ YPLLTSCGGR VESPTQPPTI HPYLQQHQDH  120
EATIGGAEHG NTTTSCGSHE VDAIKSKIIS HPQYSNLLEA YLACQKVGAP PEVAARLAAA  180
QQEFEARQRA AFSTSRDPSK DPELDQFMEA YYDMLVKYRE ELTRPVQEAM DFMRKIEAQL  240
NVIGNGRVSV FSTDDKSEGV GSSEDDQENS GGETELAEID PRAEDRELKN HLLKKYSGYL  300
SSLKQELSKK KKKGKLPKEA RQKLLSWWEL HYKWPYPSES EKVALAEATG LDQKQINNWF  360
INQRKRHWKP SEDMQFMVMD GIHPHNPALY MDGHYMGDGP YRFGT
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692662.10.0PREDICTED: homeotic protein knotted-1
SwissprotO041351e-162KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0J8BE840.0A0A0J8BE84_BETVU; Uncharacterized protein
STRINGXP_010692662.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-113KNOTTED-like from Arabidopsis thaliana