PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_021540_nmoe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 544aa    MW: 61790.1 Da    PI: 4.7459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_021540_nmoe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.52.4e-1271745432373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cA+ +s+g++++a +++++l++++s +g+p qR+aay++e+Laarl +s++ lykal+++e +   s e+laa+++++ev+P++k
  Bv1_021540_nmoe.t1 174 KQLLFDCATLISEGNFKQAASMINELRQMVSIQGEPSQRIAAYMVEGLAARLESSGKVLYKALRCKEPP---SFEKLAAMQILFEVCPCFK 261
                         689*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN+aI+ea++ e++vHiiDfdi+qG Q+++L+++La++++ + +lR+Tgv++pes+      l+++g+rL+ + e  g+pfef++ 
  Bv1_021540_nmoe.t1 262 FGFMAANEAIMEAIKYEKKVHIIDFDINQGNQYINLIRSLAKQRGRSIHLRLTGVDDPESVqrPIGGLKNIGQRLEMLSELEGLPFEFKA- 351
                         ***********************************************************99888899***********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         + +r+  +++e+L++++gEal+Vn+++ lh+l+desvs+ + rd++L++vksl+Pk+v +veq++++n+++Fl rf ea  yysa+f+sl+
  Bv1_021540_nmoe.t1 352 LPTRTPLVTPEMLDCREGEALVVNFAFLLHHLPDESVSTINLRDQLLRMVKSLNPKLVNIVEQDVNTNTTPFLSRFYEAYIYYSAVFESLD 442
                         599**************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+lpres+eri+vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+++++ + ++ l+ + + + y+++ee g+l +gW+
  Bv1_021540_nmoe.t1 443 ATLPRESQERINVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMQMAGFRSCPMRKNVSDMIRELIVTQYCNRYKLNEEMGALHFGWE 533
                         ***********************************************************************99777*************** PP

                GRAS 364 drpLvsvSaW 373
                         +++Lv++SaW
  Bv1_021540_nmoe.t1 534 NKSLVVASAW 543
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.909147524IPR005202Transcription factor GRAS
PfamPF035148.3E-125174543IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSTTYGSPRL YALKGGNNNS GLSTQLYGSE KHKIKYMTET FDSPGYDPKF FINSPSEELI  60
NPSTHPSQFD SSYQTNYELE FFTSQSPEAF EYDEGMVKLK LQELEHALLD DDEDGMDEVI  120
TGPDPSTEID EEWAGPFRNM MVQDSPKEST SSESSYLSSI SSKDESLPSP RTTKQLLFDC  180
ATLISEGNFK QAASMINELR QMVSIQGEPS QRIAAYMVEG LAARLESSGK VLYKALRCKE  240
PPSFEKLAAM QILFEVCPCF KFGFMAANEA IMEAIKYEKK VHIIDFDINQ GNQYINLIRS  300
LAKQRGRSIH LRLTGVDDPE SVQRPIGGLK NIGQRLEMLS ELEGLPFEFK ALPTRTPLVT  360
PEMLDCREGE ALVVNFAFLL HHLPDESVST INLRDQLLRM VKSLNPKLVN IVEQDVNTNT  420
TPFLSRFYEA YIYYSAVFES LDATLPRESQ ERINVEKQCL ARDIVNIVAC EGEERIERYE  480
VAGKWRARMQ MAGFRSCPMR KNVSDMIREL IVTQYCNRYK LNEEMGALHF GWENKSLVVA  540
SAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6218054426379Protein SCARECROW
5b3h_A3e-6218054425378Protein SCARECROW
5b3h_D3e-6218054425378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107771.10.0PREDICTED: scarecrow-like protein 1, partial
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0J8BFG00.0A0A0J8BFG0_BETVU; Uncharacterized protein
STRINGXP_010692620.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]