PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_021530_jxgt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 350aa    MW: 39159.4 Da    PI: 10.0166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_021530_jxgt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-182166147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  Bv1_021530_jxgt.t1 21 RGHWRPAEDEKLRKLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 66
                        899*****************************.***********996 PP
2Myb_DNA-binding58.41.6e-1873116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
  Bv1_021530_jxgt.t1  73 RKPFTEEEEERLLTAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 116
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5871671IPR017930Myb domain
SuperFamilySSF466899.36E-3019114IPR009057Homeodomain-like
SMARTSM007173.9E-152069IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-272274IPR009057Homeodomain-like
PfamPF139219.7E-182484No hitNo description
CDDcd001673.38E-142465No hitNo description
SMARTSM007174.5E-1672120IPR001005SANT/Myb domain
PROSITE profilePS5129420.72172122IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2175120IPR009057Homeodomain-like
CDDcd001672.83E-784115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEDSGGNSSD NEMKSSSSCP RGHWRPAEDE KLRKLVEQYG PQNWNSIAEK LQGRSGKSCR  60
LRWFNQLDPR INRKPFTEEE EERLLTAHRI HGNKWALISR LFPGRTDNAV KNHWHVIMAR  120
MQRERSKQQS SKRGLITSSI SSTTSSTHDF LSKAQKSQNN NYGSLKSANQ RMFKFEQHSN  180
KERKLITSTN GNTSTMACWS FAPPIISMEK YRASSSTSTQ QPQCLLGNWL GNSTSSAIFE  240
HSNGFTTSRF CGSSSILLDG SPCGGFSSYG VNYYSDQNKV VPSSSYGPLH GQSQTTTTTT  300
TTTTMRRSSL LERSEKKEEE GGERVDGGRA MVTTTKEINF IDFLGVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30211204103C-Myb DNA-Binding Domain
1msf_C1e-30211204103C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692619.10.0PREDICTED: transcription factor LAF1
TrEMBLA0A0J8E9A40.0A0A0J8E9A4_BETVU; Uncharacterized protein
STRINGXP_010692619.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-67myb domain protein 52