PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_015670_ettr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 390aa    MW: 43682.6 Da    PI: 10.214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_015670_ettr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30316373359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYeg+H h+
  Bv1_015670_ettr.t1 316 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDSSMLIVTYEGDHSHP 373
                         99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.8E-15269312IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32302374IPR003657WRKY domain
PROSITE profilePS5081130.044309375IPR003657WRKY domain
SuperFamilySSF1182902.75E-26311374IPR003657WRKY domain
SMARTSM007746.0E-37314374IPR003657WRKY domain
PfamPF031062.7E-26316373IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAVELMMGAY KSSTDSFAAR MEENAVREAT SAGLQSVEKL IKLLSQNEHL HQQHHQQQTQ  60
QQNNDSDYKV VADLAVNKFK KVISLLDRNR TGHARFRRGP LNNQQQQQQQ QQQQQQQQQH  120
PQQQQQQQQQ QQPQQQQQQQ QQQPQQQQQQ QQQQQPQQLM LESKPSHGSA FTRVYSSTTQ  180
IQRLPPLPHS NFHSSAVGVP KQIERKDSST TINFSSSPAM SATNSYISSL TGDTDSVQPS  240
MSSGFQITNL SQVSSVGNGK PPLSSSSLKR KCNSMDDSKC AGSSGRCHCP KRRKSKVKRV  300
VRVAAISLKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERALDDSS  360
MLIVTYEGDH SHPQSVTDAT VAAALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19302372271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4107511e-131AM410751.1 Beta vulgaris subsp. vulgaris microsatellite DNA, clone TGT7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688592.10.0PREDICTED: probable WRKY transcription factor 7
TrEMBLA0A0K9QJ790.0A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGXP_010688592.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-60WRKY DNA-binding protein 7